View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1917_high_9 (Length: 249)
Name: NF1917_high_9
Description: NF1917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1917_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 45044237 - 45044465
Alignment:
| Q |
1 |
ttcatgtttcatcacctacaaaatataaactaaatgagtgaaataaaattgatgtatttaaatcaaatacattaattttctttgattcgtttttgtttat |
100 |
Q |
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| T |
45044237 |
ttcatgtttcatcacctacaaaatataaattaaacgagtgaaacaaaattgatgtatttaaatcaaatacattaattttctttgattcatttttgtttat |
45044336 |
T |
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| Q |
101 |
attttgtactaatagatagaatactatttgtaaattgtctaaaacatcaacgacaattgacgttannnnnnnaaagtagaagtttatggtcttcttttct |
200 |
Q |
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| T |
45044337 |
a--ttgtactaatagatagagtactatttgtaaattgtctaaaacatcaacgacaattgacgttattttttaaaagtagaagtttatggtc-----gtct |
45044429 |
T |
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| Q |
201 |
ttgtaatcacaataaaagaaaaatttaattcatatc |
236 |
Q |
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| T |
45044430 |
ttgtaatcacaataaaagaaaaatttaattgatatc |
45044465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 35549238 - 35549280
Alignment:
| Q |
64 |
caaatacattaattttctttgattcgtttttgtttatattttg |
106 |
Q |
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| T |
35549238 |
caaatacatcaattttgtttgactcgtttttgtttatattttg |
35549280 |
T |
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