View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1917_low_10 (Length: 236)
Name: NF1917_low_10
Description: NF1917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1917_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45044032 - 45043811
Alignment:
| Q |
1 |
ccacttcaatccccctagttcttcattctttcccttctattacaatttacatcaagagtttcttctaccttggcttataagcttccatatcaatatgaag |
100 |
Q |
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| T |
45044032 |
ccacttcaatccccctagttcttcattctttcccttctattacaatttacatcaagagtttcttctaccttggcttataagcttccatatcaatatgaag |
45043933 |
T |
|
| Q |
101 |
gttagttaatactttaccctgattaaaaccactcttttatcttcttgatcatatctaaagcacgattggtaaattttccttttcttatgcacaatttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45043932 |
gttagttaatactttaccctgattaaaaccactcttttatcttcttgatcatatctaatgcacgattggtaaattttccttttcttatgcacaatttcaa |
45043833 |
T |
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| Q |
201 |
gcctgaatttgaagtaattctt |
222 |
Q |
| |
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|||| || |||||||| ||||| |
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| T |
45043832 |
gcctaaagttgaagtacttctt |
45043811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 46176109 - 46175992
Alignment:
| Q |
1 |
ccacttcaatccccctagttcttcattctttcccttctattacaatttacatcaagagtttcttctaccttggcttataagcttccatatcaatatgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| |
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| T |
46176109 |
ccacttcaatccccctagttcttcattctttcccttctattacaatttgcatcaagagtttcttctaccttagctcataagcttccataacaatatgaag |
46176010 |
T |
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| Q |
101 |
gttagttaatactttacc |
118 |
Q |
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|||||||||||||||||| |
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| T |
46176009 |
gttagttaatactttacc |
46175992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 45036607 - 45036457
Alignment:
| Q |
26 |
ttctttcccttctattacaatttacatcaagagtttcttctaccttggcttataagcttccatatcaatatgaaggttagttaatactttaccctgatta |
125 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||| ||| | |||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
45036607 |
ttctttcccttctattacaatttgcatcaagagtt-cttctacctcagctcagtagcttccataacaatatgaaggttagttaatactttaccttcatta |
45036509 |
T |
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| Q |
126 |
aaaccactcttttatcttcttgatcatatctaaagcacgattggtaaattttc |
178 |
Q |
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|||||||| |||||||| ||| |||||| |||||| | ||||||| ||||||| |
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| T |
45036508 |
aaaccact-ttttatctccttcatcatagctaaagtatgattggtgaattttc |
45036457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 46175974 - 46175916
Alignment:
| Q |
164 |
gattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtaattctt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46175974 |
gattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtacttctt |
46175916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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