View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1917_low_6 (Length: 281)

Name: NF1917_low_6
Description: NF1917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1917_low_6
NF1917_low_6
[»] chr7 (10 HSPs)
chr7 (36-204)||(4100230-4100398)
chr7 (99-183)||(4121323-4121407)
chr7 (204-269)||(4100445-4100511)
chr7 (36-77)||(33910334-33910375)
chr7 (36-77)||(44875913-44875954)
chr7 (36-77)||(1366278-1366319)
chr7 (94-146)||(4963863-4963916)
chr7 (36-77)||(26282286-26282327)
chr7 (36-71)||(29730849-29730884)
chr7 (36-71)||(29742063-29742098)
[»] chr8 (10 HSPs)
chr8 (36-82)||(34523703-34523749)
chr8 (36-75)||(18420361-18420400)
chr8 (36-69)||(3471868-3471901)
chr8 (36-77)||(12531830-12531871)
chr8 (36-77)||(13585575-13585616)
chr8 (36-76)||(3445802-3445842)
chr8 (36-76)||(42951549-42951589)
chr8 (36-78)||(3574848-3574890)
chr8 (36-74)||(44664360-44664398)
chr8 (36-77)||(39697699-39697740)
[»] chr5 (12 HSPs)
chr5 (36-82)||(10591024-10591070)
chr5 (36-77)||(13424134-13424175)
chr5 (36-76)||(3349484-3349524)
chr5 (36-75)||(43511890-43511929)
chr5 (36-77)||(12661577-12661618)
chr5 (36-77)||(41612992-41613033)
chr5 (38-75)||(42291636-42291673)
chr5 (36-71)||(931638-931673)
chr5 (36-77)||(13474900-13474941)
chr5 (36-73)||(20976251-20976288)
chr5 (36-77)||(37047052-37047093)
chr5 (41-77)||(23069468-23069504)
[»] chr4 (11 HSPs)
chr4 (36-78)||(29221376-29221418)
chr4 (36-78)||(55134478-55134520)
chr4 (36-77)||(41038521-41038562)
chr4 (36-77)||(53011984-53012025)
chr4 (36-67)||(23256866-23256897)
chr4 (36-75)||(51066067-51066106)
chr4 (36-77)||(11681495-11681536)
chr4 (36-77)||(11689774-11689815)
chr4 (36-76)||(21791305-21791345)
chr4 (36-72)||(27632668-27632704)
chr4 (36-76)||(32130544-32130584)
[»] chr2 (12 HSPs)
chr2 (36-78)||(15457771-15457813)
chr2 (36-77)||(17117399-17117440)
chr2 (36-77)||(21746985-21747026)
chr2 (36-77)||(41096293-41096334)
chr2 (36-77)||(1226021-1226062)
chr2 (36-77)||(18915803-18915844)
chr2 (36-67)||(6530931-6530962)
chr2 (36-77)||(19367178-19367219)
chr2 (36-77)||(26151501-26151542)
chr2 (36-77)||(38985463-38985503)
chr2 (36-68)||(7993901-7993933)
chr2 (36-76)||(13997582-13997622)
[»] chr3 (15 HSPs)
chr3 (117-178)||(4758847-4758908)
chr3 (36-77)||(28132488-28132529)
chr3 (36-77)||(6715708-6715749)
chr3 (36-77)||(25598836-25598877)
chr3 (36-76)||(48626784-48626824)
chr3 (36-71)||(40151892-40151927)
chr3 (36-75)||(43905609-43905648)
chr3 (36-78)||(20762323-20762365)
chr3 (36-77)||(7767335-7767376)
chr3 (36-77)||(13401727-13401768)
chr3 (36-77)||(21784534-21784575)
chr3 (43-76)||(46791451-46791484)
chr3 (36-77)||(46905011-46905052)
chr3 (36-77)||(51147207-51147248)
chr3 (36-77)||(51939308-51939349)
[»] chr1 (11 HSPs)
chr1 (36-77)||(51109852-51109893)
chr1 (36-78)||(28885423-28885465)
chr1 (36-77)||(6150992-6151033)
chr1 (37-77)||(20470884-20470924)
chr1 (36-75)||(20905041-20905080)
chr1 (36-83)||(48722113-48722160)
chr1 (36-74)||(12971675-12971713)
chr1 (36-78)||(14084450-14084492)
chr1 (36-74)||(30899934-30899972)
chr1 (36-65)||(30004673-30004702)
chr1 (36-77)||(42740374-42740415)
[»] scaffold0564 (1 HSPs)
scaffold0564 (36-77)||(1331-1372)
[»] chr6 (9 HSPs)
chr6 (36-73)||(22504013-22504050)
chr6 (36-77)||(29308221-29308262)
chr6 (36-77)||(31861256-31861297)
chr6 (36-76)||(1092796-1092836)
chr6 (37-77)||(31258325-31258365)
chr6 (36-75)||(1690473-1690512)
chr6 (36-77)||(2618622-2618663)
chr6 (36-73)||(6361032-6361069)
chr6 (36-77)||(29401408-29401449)
[»] scaffold0181 (1 HSPs)
scaffold0181 (36-67)||(16897-16928)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 4100230 - 4100398
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggctatgcttgtaatagcaacaaccaaataccaacatctttcattaaaataggggccagta 135  Q
    ||||||||||||||||||| ||||||||||||||||||||   |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4100230 attttaaaaagagagccgaacctcctatttcatagggacgatcatgcttataataccaacaaccaaataccaacatctttcattaaaataggggccagta 4100329  T
Q  136 tatggttgaagttgttaacacgatagagaaatcttcattgtgcgataaataaatatagttgcagtggag 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4100330 tatggttgaagttgttaacacgatagagaaatcttcactgtgccataaataaatatagttgcagtggag 4100398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 4121323 - 4121407
Alignment:
Q  99 caaataccaacatctttcattaaaataggggccagtatatggttgaagttgttaacacgatagagaaatcttcattgtgcgataa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  4121323 caaataccaacatctttcattaaaataggggccagtatatggttgaagttgtcaacacgatagagaaatcttcattgtgccataa 4121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 4100445 - 4100511
Alignment:
Q  204 ggaagagaaccttgtggaggatcttcacctcatcaaccaacactaaattatgta-gagcaattaatg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4100445 ggaagagaaccttgtggaggatcttcacctcatcaaccaacactaaattatgtatgagcaattaatg 4100511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 33910334 - 33910375
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  33910334 attttaaaaagagagccgagcctcctatttcacagggacggc 33910375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 44875954 - 44875913
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  44875954 attttaaaaagagagtcgagcctcctatttcatagggacggc 44875913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 1366278 - 1366319
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  1366278 attttaaatagagagccgagccttctatttcatagggacggc 1366319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 4963916 - 4963863
Alignment:
Q  94 acaaccaaataccaacatctttcattaaaat-aggggccagtatatggttgaag 146  Q
    ||||||||||||||||||||||||||||||| |||| ||  |||||||||||||    
T  4963916 acaaccaaataccaacatctttcattaaaataagggacccatatatggttgaag 4963863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 26282327 - 26282286
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  26282327 attttaaatagtgagccgagcctcctatttcatagggacggc 26282286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 29730884 - 29730849
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagg 71  Q
    ||||||||||||||| ||||||||||||||||||||    
T  29730884 attttaaaaagagagtcgagcctcctatttcatagg 29730849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 29742063 - 29742098
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagg 71  Q
    ||||||||||||||| ||||||||||||||||||||    
T  29742063 attttaaaaagagagtcgagcctcctatttcatagg 29742098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 34523749 - 34523703
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggctatgc 82  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||    
T  34523749 attttaaatagagagccgagcctcctatttcatagggacgggtatgc 34523703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 18420400 - 18420361
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18420400 attttaaaaagagagccgagcctcctatttcacagggacg 18420361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 3471868 - 3471901
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcata 69  Q
    ||||||||||||||||||||||||||||||||||    
T  3471868 attttaaaaagagagccgagcctcctatttcata 3471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 12531830 - 12531871
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  12531830 attttaaatagagagccaagcctcctatttcatagggacggc 12531871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13585575 - 13585616
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  13585575 attttaaaaagagagtcgagcctcctatttcacagggacggc 13585616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 3445802 - 3445842
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  3445802 attttaaaaagagagtcgagcctcctatttcacagggacgg 3445842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 42951589 - 42951549
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  42951589 attttaaaaagagagccgagcctcctatttcacaaggacgg 42951549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 3574890 - 3574848
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    |||||||| |||||| |||||||||||||||||||| ||||||    
T  3574890 attttaaatagagagtcgagcctcctatttcataggaacggct 3574848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 44664398 - 44664360
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggac 74  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  44664398 attttaaaaagagagccgagccacctatttcacagggac 44664360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 39697740 - 39697699
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  39697740 attttaaatagagacccaagcctcctatttcatagggacggc 39697699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 10591070 - 10591024
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggctatgc 82  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10591070 attttaaatagagagccgagcctcctatttcatagggacggccatgc 10591024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13424134 - 13424175
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  13424134 attttaaaaagagagccgagcctcctatttcacagggacggc 13424175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 3349524 - 3349484
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  3349524 attttaaatagagagccgagcctcctatttcatagggacgg 3349484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 43511890 - 43511929
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  43511890 attttaaatagagagccgagcctcctatttcatagggacg 43511929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 12661577 - 12661618
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  12661577 attttaaaaagagagccgagcctcccatttcacagggacggc 12661618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 41612992 - 41613033
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  41612992 attttaaaaagagagcagagcctcctatttcataggaacggc 41613033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 42291673 - 42291636
Alignment:
Q  38 tttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    |||||| |||||||||||||||||||||||||||||||    
T  42291673 tttaaatagagagccgagcctcctatttcatagggacg 42291636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 931638 - 931673
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagg 71  Q
    ||||||||||||||||||| ||||||||||||||||    
T  931638 attttaaaaagagagccgaacctcctatttcatagg 931673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13474900 - 13474941
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  13474900 attttaaaaagagagtcgagcctcctatttcacggggacggc 13474941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 20976251 - 20976288
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcataggga 73  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  20976251 attttaaatagagagccgagcctcctatttcacaggga 20976288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 37047052 - 37047093
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  37047052 attttaaaaagagagccgaacctcctatttcacggggacggc 37047093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 23069468 - 23069504
Alignment:
Q  41 aaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  23069468 aaaaaaagagtcgagcctcctatttcatagggacggc 23069504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 29221418 - 29221376
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  29221418 attttaaaaagagagccgagcctcctatttcacagggacggct 29221376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 55134478 - 55134520
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  55134478 attttaaatagagagccgagcctcatatttcatagggacggct 55134520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 41038521 - 41038562
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  41038521 attttaaaaagagagccgagcctcctatttcaccgggacggc 41038562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 53011984 - 53012025
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  53011984 attttaaaaagagagccgagcctcctatttcacaggaacggc 53012025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 23256866 - 23256897
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttca 67  Q
    ||||||||||||||||||||||||||||||||    
T  23256866 attttaaaaagagagccgagcctcctatttca 23256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 51066106 - 51066067
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  51066106 attttaaatagagaaccgagcctcctatttcatagggacg 51066067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 11681536 - 11681495
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  11681536 attttaaaaagagagtcgagcctcctatttcacggggacggc 11681495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 11689815 - 11689774
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  11689815 attttaaaaagagagtcgagcctcctatttcacggggacggc 11689774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 21791345 - 21791305
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  21791345 attttaaaaagagagtcgagcctcatatttcataggaacgg 21791305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 27632668 - 27632704
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcataggg 72  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  27632668 attttaaaatgagagccgagcctcctatttcacaggg 27632704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 32130584 - 32130544
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    |||||||||  ||||||||||||||||||||| ||||||||    
T  32130584 attttaaaagaagagccgagcctcctatttcacagggacgg 32130544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 15457771 - 15457813
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  15457771 attttaaatagagagccgagcctcctatttcatagggacggct 15457813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 17117440 - 17117399
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  17117440 attttaaatagagagccgagcctcctatttcatagggacggc 17117399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 21747026 - 21746985
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  21747026 attttaaatagagagccgagcctcctatttcatagggacggc 21746985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 41096334 - 41096293
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  41096334 attttaaaaagagagccgagcctcctatttcacagggacggc 41096293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 1226062 - 1226021
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  1226062 attttaaaaagagagtcgagcctcctatttcataggaacggc 1226021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 18915844 - 18915803
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  18915844 attttaaatagagagccgagcctcctattttatagggacggc 18915803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 6530931 - 6530962
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttca 67  Q
    ||||||||||||||||||||||||||||||||    
T  6530931 attttaaaaagagagccgagcctcctatttca 6530962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 19367219 - 19367178
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| | |||||||||||||| |||||||||    
T  19367219 attttaaaaagagagtcaagcctcctatttcacagggacggc 19367178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 26151542 - 26151501
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  26151542 attttaaaaagagagccaagcctcctatttcacggggacggc 26151501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 38985503 - 38985463
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  38985503 attttaaatagagagccgagcct-ctatttcatagggacggc 38985463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 7993901 - 7993933
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcat 68  Q
    ||||||||||||||||||| |||||||||||||    
T  7993901 attttaaaaagagagccgaacctcctatttcat 7993933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 13997582 - 13997622
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    |||||||||| ||| ||||||||||||||||||||| ||||    
T  13997582 attttaaaaatagaaccgagcctcctatttcataggaacgg 13997622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 4758847 - 4758908
Alignment:
Q  117 attaaaataggggccagtatatggttgaagttgttaacacgatagagaaatcttcattgtgc 178  Q
    ||||||| |||| ||| |||||||||||||||||||||||| |||| ||| |||||||||||    
T  4758847 attaaaaaagggaccaatatatggttgaagttgttaacacggtagataaaacttcattgtgc 4758908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 28132529 - 28132488
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  28132529 attttaaaaagagagccgagcctcctatttcacagggacggc 28132488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 6715708 - 6715749
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  6715708 attttaaaaagagagccgagcctcctatttcacggggacggc 6715749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 25598877 - 25598836
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  25598877 attttaaaaagagagccgagcctcctattttataggaacggc 25598836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 48626824 - 48626784
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  48626824 attttaaatagagaaccgagcctcctatttcatagggacgg 48626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 40151927 - 40151892
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagg 71  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40151927 attttaaaaagagagtcgagcctcctatttcatagg 40151892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 43905648 - 43905609
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  43905648 attttaaatagagagtcgagcctcctatttcatagggacg 43905609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 20762323 - 20762365
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    |||||||||||| |||||| |||||||||||| ||||||||||    
T  20762323 attttaaaaagaaagccgaacctcctatttcacagggacggct 20762365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 7767335 - 7767376
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||| ||| ||||||||||||||||||||| |||||    
T  7767335 attttaaaaatagaaccgagcctcctatttcataggaacggc 7767376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13401727 - 13401768
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| |||||||||||||| | |||||||||    
T  13401727 attttaaaaagagagtcgagcctcctattttacagggacggc 13401768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 21784575 - 21784534
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||| |||||||||||| |||||||||    
T  21784575 attttaaaaagagagtcgaacctcctatttcagagggacggc 21784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 46791484 - 46791451
Alignment:
Q  43 aaagagagccgagcctcctatttcatagggacgg 76  Q
    ||||||||||||||||||||||||| ||||||||    
T  46791484 aaagagagccgagcctcctatttcacagggacgg 46791451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 46905011 - 46905052
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||| ||| ||||||||||||||||||||| |||||    
T  46905011 attttaaaaatagaaccgagcctcctatttcataggaacggc 46905052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 51147207 - 51147248
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||| ||| ||||||||||||||||||||| |||||    
T  51147207 attttaaaaatagaaccgagcctcctatttcataggaacggc 51147248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 51939349 - 51939308
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  51939349 attttaaaaagagagtcgagcctactatttcacagggacggc 51939308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 51109893 - 51109852
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  51109893 attttaaaaagagagccgagcctcctatttcacagggacggc 51109852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 28885465 - 28885423
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  28885465 attttaaaaagagagtcgagcctcctatttcatatggacggct 28885423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 6150992 - 6151033
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  6150992 attttaaaaagagagtcgagcctcctatttcacagggacggc 6151033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 20470884 - 20470924
Alignment:
Q  37 ttttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  20470884 ttttaaaaagagagccgagcctcctatttcacggggacggc 20470924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 20905080 - 20905041
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  20905080 attttaaaaagagagtcgagcctcctatttcacagggacg 20905041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 48722160 - 48722113
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggctatgct 83  Q
    ||||||||||||||| |||||||||||||||| | |||||||| ||||    
T  48722160 attttaaaaagagagtcgagcctcctatttcacacggacggctctgct 48722113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 12971675 - 12971713
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggac 74  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  12971675 attttaaatagagagccgagcctcctattttatagggac 12971713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 14084492 - 14084450
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggct 78  Q
    |||||||||||||||||||||||||||||| |  |||||||||    
T  14084492 attttaaaaagagagccgagcctcctattttactgggacggct 14084450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 30899934 - 30899972
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggac 74  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  30899934 attttaaaaagagagccgaacctcctatttcacagggac 30899972  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 30004702 - 30004673
Alignment:
Q  36 attttaaaaagagagccgagcctcctattt 65  Q
    ||||||||||||||||||||||||||||||    
T  30004702 attttaaaaagagagccgagcctcctattt 30004673  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 42740374 - 42740415
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||| ||| ||||||||||||||||||||| |||||    
T  42740374 attttaaaaatagaaccgagcctcctatttcataggaacggc 42740415  T

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Target: scaffold0564 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 1331 - 1372
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  1331 attttaaaaagagagccgagcctcctatttcacggggacggc 1372  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 22504013 - 22504050
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcataggga 73  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22504013 attttaaaaagagaaccgagcctcctatttcataggga 22504050  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 29308262 - 29308221
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  29308262 attttaaatagagagccgagcctcctatttcatggggacggc 29308221  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 31861256 - 31861297
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  31861256 attttaaatagagagtcgagcctcctatttcatagggacggc 31861297  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 1092836 - 1092796
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacgg 76  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  1092836 attttaaatagagaaccgagcctcctatttcatagggacgg 1092796  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 31258365 - 31258325
Alignment:
Q  37 ttttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  31258365 ttttaaaaagagagccgagcctcctatttcacggggacggc 31258325  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 1690512 - 1690473
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacg 75  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  1690512 attttaaatagagagccgagcctcctatttcatagagacg 1690473  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 2618622 - 2618663
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||||||| |||||||||||| | |||||||    
T  2618622 attttaaaaagagagccgaacctcctatttcacatggacggc 2618663  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 6361032 - 6361069
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcataggga 73  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6361032 attttaaaaagagagccgagccttctatttcacaggga 6361069  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 29401408 - 29401449
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttcatagggacggc 77  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  29401408 attttaaaaagagagtcgagcctcctatttcacggggacggc 29401449  T

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Target: scaffold0181 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 67
Target Start/End: Complemental strand, 16928 - 16897
Alignment:
Q  36 attttaaaaagagagccgagcctcctatttca 67  Q
    ||||||||||||||||||||||||||||||||    
T  16928 attttaaaaagagagccgagcctcctatttca 16897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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