View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1917_low_8 (Length: 250)
Name: NF1917_low_8
Description: NF1917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1917_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 41749964 - 41750174
Alignment:
| Q |
15 |
aaatatttcaatctcgactcagcaatttaattataataa-aaattaacaaatgagggtgtatgcaagacatatatgttagttcaacaaaaagtaaatggg |
113 |
Q |
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| T |
41749964 |
aaatatttcaatctcgactcagcaatttaattataataagaaattatcaaatgagggtgtatgcaagacatatatgttagttcaacaaaaagtaaatggg |
41750063 |
T |
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| Q |
114 |
atttggtaaattaagaaattaaagtgatcagttctttcgaatcgattaactttatttgtttggtaattgtaccaattttctacaagatttcgtctagtat |
213 |
Q |
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| T |
41750064 |
atttggtaaattaagaaattaaagtgataagttctttcgaatcgattaactttatttgtttggtaattgtaccaattttctacaagatttcgtctagtat |
41750163 |
T |
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| Q |
214 |
cacaataaatt |
224 |
Q |
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| T |
41750164 |
cacaataaatt |
41750174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 22093029 - 22093093
Alignment:
| Q |
131 |
attaaagtgatcagttctttcgaatcgattaactttatttgtttggtaattgtaccaattttcta |
195 |
Q |
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| T |
22093029 |
attaaagtgatcaagtccttcgaatcaattaattttcactgtttggtaattgtacctattttcta |
22093093 |
T |
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