View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19180_high_1 (Length: 426)
Name: NF19180_high_1
Description: NF19180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19180_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 43814701 - 43815107
Alignment:
| Q |
1 |
aacccatatgttatttaattttgaaaatagcataagtttaatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43814701 |
aacccatatgttatttaattttgaaaatagcataagtttaatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagata |
43814800 |
T |
|
| Q |
101 |
taaataaatgaattcaaaagatagactcttgcttatatgtgcatgatgaaacaataatttaaataggggccatgaaactcattgatcactttaaatgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43814801 |
taaataaatgaattcaaaagatagactcttgcttatatgtgcatgatgaaacaataatttaaataggggccatgaaactcattgatcactttaaatgaaa |
43814900 |
T |
|
| Q |
201 |
aaaggataatgatctcacaaaattatcactttaaagaaataagtttgtctaatatgaacccctgatattgagccaaactgaattcttgataaacgaaaaa |
300 |
Q |
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| T |
43814901 |
aaaggataatgatctcacaaaattatcactttaaagaaataagtttgtctaatatgaa-ccctaatattgagccaaactgaattcttgataaacgaaaaa |
43814999 |
T |
|
| Q |
301 |
accgagtttctacaagtacatacttcatggccattgcttgcatcgatgaattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctg |
400 |
Q |
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| T |
43815000 |
atcgagtttctacaagtacatacttcatggccattgcttgcatcggtgaattttctttcaaatctgtttaaagagccagctcttaatatgtcttgttctg |
43815099 |
T |
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| Q |
401 |
ttgttctt |
408 |
Q |
| |
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|||||||| |
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| T |
43815100 |
ttgttctt |
43815107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 29234488 - 29234416
Alignment:
| Q |
39 |
taatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaa |
112 |
Q |
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| T |
29234488 |
taatattggtttgtggttaagtttcttgttttagaagataaaaat-agtcagagcaaagatttaaataaatgaa |
29234416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 29341703 - 29341639
Alignment:
| Q |
44 |
ttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaa |
108 |
Q |
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|||||| |||||||| ||| ||||||||||| |||| || ||||||| |||||||||||||||| |
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| T |
29341703 |
ttggttggtgtttaactttcttgctatagaaaataagaaacagttggatcaaagatataaataaa |
29341639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 29234313 - 29234254
Alignment:
| Q |
349 |
aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttctt |
408 |
Q |
| |
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||||||||||||||| || | | |||||| ||||||||||||||||| ||| |||||||| |
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| T |
29234313 |
aattttcttccaaatttgctaatagagccggctcttaatatgtcttgctcttttgttctt |
29234254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 408
Target Start/End: Original strand, 30919558 - 30919617
Alignment:
| Q |
349 |
aattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttctt |
408 |
Q |
| |
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|||||||||||||| |||| | ||||| ||||||||||||||||| |||| |||||||| |
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| T |
30919558 |
aattttcttccaaacgtgttaatagagctagctcttaatatgtcttcttcttttgttctt |
30919617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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