View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19180_low_2 (Length: 287)
Name: NF19180_low_2
Description: NF19180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19180_low_2 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 9166029 - 9165761
Alignment:
| Q |
1 |
ataagctgattgaagttgatagatgcatgtcattaatatacattcttaattgtgatattgaaaaataatttgttcataaaccccatgtccctattgacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166029 |
ataagctgattgaagttgatagatgcatgtcattaatttacattcttaattgtgatattgaaaaataatttgttcataaaccccatgtccctattgacct |
9165930 |
T |
|
| Q |
101 |
tatgttcatgtatcgattattatcgaaaagatttgaattctgaaaatattgttgctaatttttcatttcttgttactttaggaaaaggaacaaatttcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9165929 |
tatgttcatgtatcgattattatcgaaaagatttgaattctgaaagtattgttgttaatttttcatttcttgttactttaggaaaagaaacaaatttcag |
9165830 |
T |
|
| Q |
201 |
agttaactgaagagagagattatcttaagaagggaaataaaaggcttcagcaagcactggtatgccatt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9165829 |
agttaactgaagagagagattatcttaagaagggaaataaaaggcttcagcaagcactggtatgccatt |
9165761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9259030 - 9259297
Alignment:
| Q |
1 |
ataagctgattgaagttgatagatgcatgtcattaatatacattcttaattgtgatattgaaaaataatttgttcataaaccccatgtccctattgacct |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
9259030 |
ataagctgattgcagttgatagatgcatgtcattaatttacattcttaattgtgatattgaaaaataacttgttcataaaccccatctccctattgacct |
9259129 |
T |
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| Q |
101 |
tatgttcatgtatcgattattatcgaaaagatttgaattctgaaaatattgttgctaatttttcatttcttgttactttaggaaaaggaacaaatttcag |
200 |
Q |
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| T |
9259130 |
tacgttcatgtatcgattattattgaaaagatttgaattctg-aaatattgttgctcattttttatttcttgtcattttaggcaaaggatcaaatttcgg |
9259228 |
T |
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| Q |
201 |
agttaactgaagagagagattatcttaagaagggaaataaaaggcttcagcaagcactggtatgccatt |
269 |
Q |
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| T |
9259229 |
agttaaccgaagagagagattatcttaagaaggaaaataaaaggcttcaggaagcactggtacgccatt |
9259297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 59 - 269
Target Start/End: Original strand, 9173434 - 9173641
Alignment:
| Q |
59 |
tgaaaaataatttgttcataaaccccatgtccctat--------tgaccttatgttcatgtatcgattattatcgaaaagatttgaattctgaaaatatt |
150 |
Q |
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|||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
9173434 |
tgaaaaataacttgttcataaaccccatgtccctataaccctattcaccttatgtttatgtatcgattattatcgaaaatatttgaattctgaaa-tatt |
9173532 |
T |
|
| Q |
151 |
gttgctaatttttcatttcttgttactttaggaaaaggaacaaatttcagagttaactgaagagagagattatcttaagaagggaaataaaaggcttcag |
250 |
Q |
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||| || |||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9173533 |
gtttctcattttttattccttgttattttaggcaaaggaacaaatttcagagttaactgaagagagagattatcttaag----------aaaggcttcag |
9173622 |
T |
|
| Q |
251 |
caagcactggtatgccatt |
269 |
Q |
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||||||||||||||||||| |
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| T |
9173623 |
caagcactggtatgccatt |
9173641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9237705 - 9237959
Alignment:
| Q |
1 |
ataagctgattgaagttgatagatgcatgtcattaatatacattcttaattgtgatattgaaaaataatttgttcataaaccccatgtccctattgacct |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| || |||| ||||||||||||||||| ||||| |
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| T |
9237705 |
ataagctgattgaagttgatagattcatgtcattaatttacattct-------------gaaaaataacttcttcacaaaccccatgtccctatagacct |
9237791 |
T |
|
| Q |
101 |
tatgttcatgtatcgattattatcgaaaagatttgaattctgaaaatattgttgctaatttttcatttcttgttactttaggaaaaggaacaaatttcag |
200 |
Q |
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||| |||||||||||| ||||||||||||||||||||| || ||||||| | ||| |||||| ||||||||||| |||||| |||| | | ||||||| |
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| T |
9237792 |
tatcttcatgtatcgaacattatcgaaaagatttgaattgtg-aaatattatagctcattttttatttcttgttattttaggcaaagccaaatatttcag |
9237890 |
T |
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| Q |
201 |
agttaactgaagagagagattatcttaagaagggaaataaaaggcttcagcaagcactggtatgccatt |
269 |
Q |
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|||||| | ||||||||| | ||||||| | | ||||||||| ||| ||| |||||||||||||| |
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| T |
9237891 |
agttaatcgcagagagagaatttcttaaggaattatataaaaggcatcaagaagaactggtatgccatt |
9237959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 1706 - 1960
Alignment:
| Q |
1 |
ataagctgattgaagttgatagatgcatgtcattaatatacattcttaattgtgatattgaaaaataatttgttcataaaccccatgtccctattgacct |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
1706 |
ataagctgattgaagttgatagattcatgtcactaatttacattct-------------gaaaaataacttgttcacaaaccccatgtccctatagacct |
1792 |
T |
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| Q |
101 |
tatgttcatgtatcgattattatcgaaaagatttgaattctgaaaatattgttgctaatttttcatttcttgttactttaggaaaaggaacaaatttcag |
200 |
Q |
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|||||| ||||||| | ||||||||||||||||||||| || ||||||| | ||| |||||| ||||||||||| |||||| |||| | | ||||||| |
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| T |
1793 |
tatgtttatgtatccaacattatcgaaaagatttgaattgtg-aaatattatagctcattttttatttcttgttattttaggcaaagccaaatatttcag |
1891 |
T |
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| Q |
201 |
agttaactgaagagagagattatcttaagaagggaaataaaaggcttcagcaagcactggtatgccatt |
269 |
Q |
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|||||| | ||||||||||| ||||||| | ||||||||||| ||| |||| |||||||||||||| |
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| T |
1892 |
agttaatcgcagagagagattttcttaaggaattaaataaaaggcatcaacaagaactggtatgccatt |
1960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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