View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19181_high_2 (Length: 317)
Name: NF19181_high_2
Description: NF19181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19181_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 8767583 - 8767295
Alignment:
| Q |
18 |
atcactttcataattgatccatgatacattatcagttctttcatatttgaagttgatctctcttccataaggaaaaataaatatgtatttttcaaagact |
117 |
Q |
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| T |
8767583 |
atcactttcataattgatccatgatacattatcatttctttcatatttgaagttgatttctcttccacaaggaaaaataaatatgtatttttcaa-gact |
8767485 |
T |
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| Q |
118 |
tacttacttgtttggtcaagtggcatgttcgttgaatgtcgtcaaaaatgatataaatatatgtggatgaatattacattatcataaaaggtgggtagag |
217 |
Q |
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| T |
8767484 |
tacttacttgtttggtcaagtggcatgttcgttgaatgtcgtcaaaagtgatataaatgtatgtggatcaatattacattatcataaaaggtggatagag |
8767385 |
T |
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| Q |
218 |
ttcgctcactttgatgttgagtttggactattatcaataaaattttaattattgacnnnnnnngagtttcaagtgatttattttcctttg |
307 |
Q |
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| T |
8767384 |
ttagctcactttgatgctgagtttggactattatcaataaaattttaattatcgacaaaaaatgagtttcaagtgatttattttcctttg |
8767295 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 11803930 - 11803860
Alignment:
| Q |
199 |
tcataaaaggtgggtagagttcgctcactttgatgttgagtttggactattatcaataaaattttaattattga |
272 |
Q |
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| T |
11803930 |
tcatagaaggtgggtagagtt---tcactttgatgttgggttcggacctttattaataaaattttaactattga |
11803860 |
T |
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