View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19181_low_3 (Length: 235)
Name: NF19181_low_3
Description: NF19181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19181_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 31717544 - 31717315
Alignment:
| Q |
6 |
ttctaatatttccttcactggtaatgttcgtttaggatcaaaaccttcaccttcaccatgtacacttattgaattacagcgaatctgatcaaggctacat |
105 |
Q |
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| T |
31717544 |
ttctaatatttccttcactagtaatgttcttttaggatcaaaaccttcaccttcaccatgcacacttattgaattacagcgaatctgatcaaggctacat |
31717445 |
T |
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| Q |
106 |
tgtcaagagaaccttgaacaacttcatctgcattttcaacatgactctattctttgctgtaggacctggacactagaaattatttcaaaatgaaatactt |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717444 |
tgtcaagagaacgttgaacaacttcatctgcattttcaacatgtctctattctttgttgtaggacctggacactagaaattatttcaaaatgaaatactt |
31717345 |
T |
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| Q |
206 |
ttatcaaatcaaacactaaaagcttaaaat |
235 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31717344 |
ttatcaaatcaaacactaaaagcttaaaat |
31717315 |
T |
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