View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19182_high_11 (Length: 288)

Name: NF19182_high_11
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19182_high_11
NF19182_high_11
[»] chr4 (10 HSPs)
chr4 (18-288)||(30220078-30220348)
chr4 (18-168)||(30280766-30280916)
chr4 (20-168)||(30304342-30304490)
chr4 (18-168)||(30271273-30271423)
chr4 (18-281)||(30048577-30048843)
chr4 (18-281)||(30062918-30063184)
chr4 (18-281)||(30032331-30032597)
chr4 (18-285)||(30228716-30228986)
chr4 (18-157)||(30264379-30264518)
chr4 (18-157)||(30287670-30287809)
[»] chr7 (2 HSPs)
chr7 (24-92)||(2311384-2311452)
chr7 (44-125)||(29483248-29483329)
[»] scaffold0024 (2 HSPs)
scaffold0024 (18-158)||(72487-72627)
scaffold0024 (18-158)||(79551-79691)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30220348 - 30220078
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30220348 agctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 30220249  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataattatcatataata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30220248 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataattatcatataata 30220149  T
Q  218 ttgatgatgagtttgtggtttcaggaaatttaggaatctttacgtgctcttcaagcttcacttcaaccctt 288  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30220148 ttgatgatgagtttgtggtttcaggaaatttaggaatctttatgtgctcttcaagcttcacttcaaccctt 30220078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 30280916 - 30280766
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30280916 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 30280817  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttctt 168  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  30280816 ggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctt 30280766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 30304342 - 30304490
Alignment:
Q  20 ctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30304342 ctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttgg 30304441  T
Q  120 atatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttctt 168  Q
    ||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  30304442 atatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctt 30304490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 30271273 - 30271423
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30271273 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttcttgtt 30271372  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttctt 168  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  30271373 ggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctt 30271423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 30048577 - 30048843
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |  || |    ||||||| |||||    
T  30048577 agctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgtt 30048676  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataattatcatataat- 216  Q
    ||||| || || | ||||||||||||||| ||||||||||| |||||| ||  || ||||||||||||||||||||||||||||||||| |||||||||     
T  30048677 ggataattgataacatgaatttcccaaagtggtttatcttgtggtgtttttttagctagaatacttgttacatagtcactaagataattgtcatataatt 30048776  T
Q  217 --attgatgatgagtttgtggtttcaggaaatttaggaatctttacgtgctcttcaagcttcacttc 281  Q
        ||||||||| ||| |||||||||||||| | |||||||||| ||| |||||| ||||||||||    
T  30048777 cacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttc 30048843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 30062918 - 30063184
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |  || |    ||||||| |||||    
T  30062918 agctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgtt 30063017  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataattatcatataat- 216  Q
    ||||| || || | ||||||||||||||| ||||||||||| |||||| ||  || ||||||||||||||||||||||||||||||||| |||||||||     
T  30063018 ggataattgataacatgaatttcccaaagtggtttatcttgtggtgtttttttagctagaatacttgttacatagtcactaagataattgtcatataatt 30063117  T
Q  217 --attgatgatgagtttgtggtttcaggaaatttaggaatctttacgtgctcttcaagcttcacttc 281  Q
        ||||||||| ||| |||||||||||||| | |||||||||| ||| |||||| ||||||||||    
T  30063118 cacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttc 30063184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 30032331 - 30032597
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |  || |      ||||| |||||    
T  30032331 agctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgtt 30032430  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataattatcatataat- 216  Q
    ||||| || || | ||||||||||||||| ||||||||||| |||||||||  || |||||||||||||||||||||| ||| |||||| |||||||||     
T  30032431 ggataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttcagctagaatacttgttacatagtcattaaaataattgtcatataatt 30032530  T
Q  217 --attgatgatgagtttgtggtttcaggaaatttaggaatctttacgtgctcttcaagcttcacttc 281  Q
        ||||||||| ||| |||||||||||||| | |||||||||| ||| |||||| ||||||||||    
T  30032531 cacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttc 30032597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 30228716 - 30228986
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |  || |    ||||||| |||||    
T  30228716 agctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgtt 30228815  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttcttgaagttagaatacttgttacatagtcactaagataattatcatataat- 216  Q
    ||||| || || | ||||||||||||||| ||||||| ||| |||||||||  | ||||||||||||||||||||| ||||| ||| || |||||||||     
T  30228816 ggataattgataatatgaatttcccaaagtggtttattttgtggtgttcttccatttagaatacttgttacatagttactaacatatttgtcatataatt 30228915  T
Q  217 --attgatgatgagtttgtggtttcaggaaatttaggaatctttacgtgctcttcaagcttcacttcaacc 285  Q
        ||||||||| ||| |||||||||||||| | |||||||||| ||| |||||| ||||||||||||||    
T  30228916 cacatgatgatgaatttatggtttcaggaaatatgggaatctttaagtgttcttcaggcttcacttcaacc 30228986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 30264379 - 30264518
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||      |||||||||||||    
T  30264379 agctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgtt 30264478  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatctt 157  Q
    ||||| || || | ||| ||||||||||||||||| ||||    
T  30264479 ggatacttgataacatgtatttcccaaaggggtttgtctt 30264518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 30287809 - 30287670
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||      |||||||||||||    
T  30287809 agctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgtt 30287710  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatctt 157  Q
    ||||| || || | ||| ||||||||||||||||| ||||    
T  30287709 ggatacttgataacatgtatttcccaaaggggtttgtctt 30287670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 2311452 - 2311384
Alignment:
Q  24 ttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 92  Q
    |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  2311452 ttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 2311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 29483248 - 29483329
Alignment:
Q  44 cacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatattt 125  Q
    |||||||||||  ||| ||||| |||| ||||||||||| |||||| | ||| ||||||  |||||||||||| || |||||    
T  29483248 cacccatgagattgtagccatctccaattgcatggtgaaatttgaacaccaaggttcctgcagcattgcttgtggggtattt 29483329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 72487 - 72627
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    |||||||| || ||| || |||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||  || || ||    |||||  |||||    
T  72487 agctctttctaaacatgatagaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgtt 72586  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttg 158  Q
    ||||||||||| | |||||||||||| || ||| |||||||    
T  72587 ggatatttaataatatgaatttcccatagtggtctatcttg 72627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 79551 - 79691
Alignment:
Q  18 agctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgtt 117  Q
    |||||||| || ||| |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||  || || ||    |||||  |||||    
T  79551 agctctttctaaacatgaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgtt 79650  T
Q  118 ggatatttaatcaaatgaatttcccaaaggggtttatcttg 158  Q
    ||||||||||| | ||| || |||||||| ||| |||||||    
T  79651 ggatatttaataatatgtatctcccaaagtggtctatcttg 79691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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