View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19182_high_13 (Length: 250)

Name: NF19182_high_13
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19182_high_13
NF19182_high_13
[»] chr2 (2 HSPs)
chr2 (1-244)||(37570997-37571240)
chr2 (2-80)||(11862313-11862390)
[»] chr8 (2 HSPs)
chr8 (3-88)||(4187381-4187465)
chr8 (3-55)||(28452042-28452094)
[»] chr6 (1 HSPs)
chr6 (17-82)||(20500415-20500479)
[»] chr1 (3 HSPs)
chr1 (3-88)||(4080379-4080463)
chr1 (2-86)||(4408307-4408390)
chr1 (8-72)||(47763150-47763213)
[»] scaffold0100 (1 HSPs)
scaffold0100 (39-87)||(39230-39277)
[»] chr7 (1 HSPs)
chr7 (10-80)||(3371436-3371505)
[»] chr5 (1 HSPs)
chr5 (2-55)||(34367200-34367253)
[»] chr4 (1 HSPs)
chr4 (3-55)||(56094300-56094352)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 37570997 - 37571240
Alignment:
Q  1 acaatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaagaccccgattaataca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  37570997 acaatctaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattggttgattttgtttcaaactaagaccccgattaataca 37571096  T
Q  101 ctatgaaccatagttttaagacggtgaatttgaaccaacaataatcatctccataaacactttttgactgaatttcatgattataaagaataattgtgca 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  37571097 ctatgaaccatagttttaagacggtgaatttgaaccaacgataatcttctccataaatactttttaactgaatttcatgattataaagaataattgtgca 37571196  T
Q  201 tatattatatgacttaaatgatattagatgttcagtattatcta 244  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  37571197 tatattatatgacttaagtgatattagatgttcagttttatcta 37571240  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 11862313 - 11862390
Alignment:
Q  2 caatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaa 80  Q
    ||||| |||||||| |||| ||||||| |||||||  |||| |||||||||| ||||||| |||  |||||||||||||    
T  11862313 caattcaatcctaactttacagataaatatttcatcaacaaaattataaatc-aagtaatcgatcaattttgtttcaaa 11862390  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 4187381 - 4187465
Alignment:
Q  3 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaagacc 88  Q
    ||||||||||||| |||||||||||| |||||||  ||||| ||||||||| |||||||  ||  |||||||||||||||||||||    
T  4187381 aatttaatcctaaatttatagataaatatttcatcaacaacgttataaatc-aagtaatcaatcaattttgtttcaaattaagacc 4187465  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 28452042 - 28452094
Alignment:
Q  3 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaa 55  Q
    |||| ||||||||||||| ||||||| |||||||| |||| ||||||||||||    
T  28452042 aattcaatcctaattttaaagataaatatttcattaacaatattataaatcaa 28452094  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20500415 - 20500479
Alignment:
Q  17 tttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaatt 82  Q
    |||||||||||| ||| |||  |||| |||||||||||| ||||||||||||||||||||||||||    
T  20500415 tttatagataaatattccataaacaatattataaatcaa-gtaattgattgattttgtttcaaatt 20500479  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 4080463 - 4080379
Alignment:
Q  3 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaagacc 88  Q
    ||||||| | |||||||| ||||||| |||||||| |||| |||| ||||||| ||||| |||  |||||||||||||||||||||    
T  4080463 aatttaagcataattttacagataaatatttcattaacaatattacaaatcaa-gtaatcgatcaattttgtttcaaattaagacc 4080379  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 4408307 - 4408390
Alignment:
Q  2 caatttaatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaattaaga 86  Q
    ||||| |||| ||||||||| |||||| |||||||| |||| ||||||||||||| ||||||||| ||||| ||| ||| |||||    
T  4408307 caattcaatcttaattttattgataaatatttcattaacaaaattataaatcaaa-taattgattaattttattttaaactaaga 4408390  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 47763213 - 47763150
Alignment:
Q  8 aatcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgatttt 72  Q
    ||||||||||||| |||||||||||||||   |||||||||||||| ||||| ||||| ||||||    
T  47763213 aatcctaattttacagataaacatttcatcagcaacattataaatc-aagtatttgatcgatttt 47763150  T

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Target: scaffold0100 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 39277 - 39230
Alignment:
Q  39 acaacattataaatcaaagtaattgattgattttgtttcaaattaagac 87  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  39277 acaacattataaatcaa-gtaattgattgatttcgtttcaaattaagac 39230  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 3371505 - 3371436
Alignment:
Q  10 tcctaattttatagataaacatttcattcacaacattataaatcaaagtaattgattgattttgtttcaaa 80  Q
    ||||||||||||||||||| |||||||  |||||| |||||||| || |||||||| ||| ||||||||||    
T  3371505 tcctaattttatagataaatatttcatcaacaacaatataaatc-aattaattgatcgatattgtttcaaa 3371436  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 34367253 - 34367200
Alignment:
Q  2 caatttaatcctaattttatagataaacatttcattcacaacattataaatcaa 55  Q
    ||||| ||||||||||||| ||||||| |||||||  |||||||| ||||||||    
T  34367253 caattcaatcctaattttagagataaatatttcatcaacaacattttaaatcaa 34367200  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 56094352 - 56094300
Alignment:
Q  3 aatttaatcctaattttatagataaacatttcattcacaacattataaatcaa 55  Q
    ||||||| |||||||||| ||||||| |||| ||  |||||||||||||||||    
T  56094352 aatttaagcctaattttacagataaatatttgatcaacaacattataaatcaa 56094300  T

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