View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19182_high_6 (Length: 334)
Name: NF19182_high_6
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19182_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 28097130 - 28097428
Alignment:
| Q |
18 |
gtattctattaggatcttcaagacttttgcaattgggcaacaaaatatattagcatttgttcatgtatgaacaagtaaggtgtgcttccttcgtcggtga |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28097130 |
gtattctattaggatcttcaagactattgtaattgggcaacaaaatatattagcatttgttcatgtatgaacaagtaaggtgtgcttccttcgtctgtga |
28097229 |
T |
|
| Q |
118 |
gttgatctactgcaactagttgtatgctccttctttaaagt-gggggtgtgcctgcaaaaggcactatgacgcccaaataagaatgagtactagcatgta |
216 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28097230 |
gtagatctactgcaattagttgtatgctccttctttaaagtggggggtgtgcctgcaaaagacactatgacgcccaaataagaatgagtgctagcatgta |
28097329 |
T |
|
| Q |
217 |
gcaaagtgagtacaccatgttagtaatgaaatgaacgtacatgggagaaacatcccttatttataatgatatttttgatgccagactatttggttgttc |
315 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||| || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28097330 |
gcaaagtgagtataacatgttagtaatgtaatggacatacatgggagaaacaccccttatttataatgatatttttgatgccagactctttggttgttc |
28097428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University