View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19182_low_1 (Length: 622)

Name: NF19182_low_1
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19182_low_1
NF19182_low_1
[»] chr5 (9 HSPs)
chr5 (1-622)||(33062279-33062891)
chr5 (513-622)||(33083368-33083476)
chr5 (346-425)||(33083249-33083328)
chr5 (186-297)||(33081782-33081894)
chr5 (7-66)||(33081689-33081748)
chr5 (594-622)||(33063958-33063986)
chr5 (594-622)||(33065044-33065072)
chr5 (594-622)||(33067204-33067232)
chr5 (594-622)||(33069342-33069370)


Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 33062279 - 33062891
Alignment:
Q  1 taatactagtatggttgaagtccacatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaacat 100  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33062279 taatactagtatg-tagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaacat 33062377  T
Q  101 ccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatatttatatagataatgatgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33062378 ccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatgca 33062477  T
Q  201 agaggaagaaaattggagtcagagaaaaccagagtgaat-agtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcatttt 299  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33062478 agaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcatttt 33062577  T
Q  300 gtatctaatacattttatggctcaatcttggctaaaacatgtagtatttgactttttcaaatatttgcattaaatatgagcctagtctggtttggtaggc 399  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  33062578 gcatctaatacattatatggctcaatcttggctaaaacatgtagtatttgattttttcaaatatttgcattaaatatgagcctagtctggttcggtaggc 33062677  T
Q  400 ttaattgggagagccaaaatgttcaaannnnnnngattgtataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattgac 499  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33062678 ttaattgggagagccaaaatgttcaaatttttttgattgtataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattgac 33062777  T
Q  500 atccttgacacatacgtatagaaggttaggacattgtttatcctccaccttcattattgaaaaacccatatgtttttggaagtgcacactcaaaccacac 599  Q
    ||| |||||||||||||||| ||||||||| ||||||||   ||||||| ||||||||||||||| ||||||||||||||||||||         |||||    
T  33062778 atcattgacacatacgtataaaaggttagggcattgttttatctccaccctcattattgaaaaacacatatgtttttggaagtgca---------cacac 33062868  T
Q  600 aaattgtctgaaagtgcacactc 622  Q
    |||||||||||||||||||||||    
T  33062869 aaattgtctgaaagtgcacactc 33062891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 513 - 622
Target Start/End: Original strand, 33083368 - 33083476
Alignment:
Q  513 acgtatagaaggttaggacattgtttatcctccaccttcattattgaaaaacccatatgtttttggaagtgcacactcaaaccacacaaattgtctgaaa 612  Q
    ||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  33083368 acgtataaaaggttagggcattgtttatc-tccaccctcattattgaaaaacccatatgtttttagaagtgcacactcaaaccacataaattgtttgaaa 33083466  T
Q  613 gtgcacactc 622  Q
    ||||||||||    
T  33083467 gtgcacactc 33083476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 33083249 - 33083328
Alignment:
Q  346 tttgactttttcaaatatttgcattaaatatgagcctagtctggtttggtaggcttaattgggagagccaaaatgttcaa 425  Q
    |||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  33083249 tttgactttttcaactgtttgcattaaatatgagcctagtctgattcggtaggcttaattggtagagccaaaatgttcaa 33083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 33081782 - 33081894
Alignment:
Q  186 atagataatgatgcaagaggaagaaaattggagtcagagaaaaccagagtgaatagtatttcataaacaata---tttcatatcaagaaaaattaataag 282  Q
    ||||||||| |||||||||||||| ||| |||||||||  ||  |||||| ||| |||||||||||||||||   |||||||||||||||||||||||||    
T  33081782 atagataataatgcaagaggaagagaatcggagtcaga--aagtcagagtaaatggtatttcataaacaatagtatttcatatcaagaaaaattaataag 33081879  T
Q  283 ctcggtgacatcatt 297  Q
     || |||||||||||    
T  33081880 atcagtgacatcatt 33081894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 33081689 - 33081748
Alignment:
Q  7 tagtatggttgaagtccacatccaacatgtaggaacaacaaacaactaagcaagaatata 66  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33081689 tagtatagtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata 33081748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 622
Target Start/End: Original strand, 33063958 - 33063986
Alignment:
Q  594 ccacacaaattgtctgaaagtgcacactc 622  Q
    |||||||||||||||||||||||||||||    
T  33063958 ccacacaaattgtctgaaagtgcacactc 33063986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 622
Target Start/End: Original strand, 33065044 - 33065072
Alignment:
Q  594 ccacacaaattgtctgaaagtgcacactc 622  Q
    |||||||||||||||||||||||||||||    
T  33065044 ccacacaaattgtctgaaagtgcacactc 33065072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 622
Target Start/End: Original strand, 33067204 - 33067232
Alignment:
Q  594 ccacacaaattgtctgaaagtgcacactc 622  Q
    |||||||||||||||||||||||||||||    
T  33067204 ccacacaaattgtctgaaagtgcacactc 33067232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 622
Target Start/End: Original strand, 33069342 - 33069370
Alignment:
Q  594 ccacacaaattgtctgaaagtgcacactc 622  Q
    |||||||||||||||||||||||||||||    
T  33069342 ccacacaaattgtctgaaagtgcacactc 33069370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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