View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19182_low_17 (Length: 227)
Name: NF19182_low_17
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19182_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 33083462 - 33083649
Alignment:
| Q |
3 |
tgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaatcaattactactccacacatctaaatggtcactttccaaa |
102 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33083462 |
tgaaagtgcacactcaacccatatgttttacaaaaacatgtatttaagaacaacctttaatcaattacgactccacacatctaaatggtcactttccaaa |
33083561 |
T |
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| Q |
103 |
acagtatccaaaatgttcatgaccactttagcctaatcgagttaaggacccaaaaagcagc---acaacaaagtaacaaacacaagaga |
188 |
Q |
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| T |
33083562 |
acagtatccaaaatgttcatgaccac-ttagcctaattgagttaaggacccaaaaaacagcaaaacaacaaagtaacaaacacgagaga |
33083649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33063970 - 33064031
Alignment:
| Q |
1 |
tctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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| T |
33063970 |
tctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33064031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33065056 - 33065117
Alignment:
| Q |
1 |
tctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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| T |
33065056 |
tctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33065117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33067216 - 33067277
Alignment:
| Q |
1 |
tctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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| T |
33067216 |
tctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33067277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33069354 - 33069415
Alignment:
| Q |
1 |
tctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
33069354 |
tctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 33066132 - 33066191
Alignment:
| Q |
3 |
tgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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| T |
33066132 |
tgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33066191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 33068270 - 33068329
Alignment:
| Q |
3 |
tgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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| T |
33068270 |
tgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33068329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33062875 - 33062936
Alignment:
| Q |
1 |
tctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
62 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
33062875 |
tctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaatctttaa |
33062936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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