View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19182_low_2 (Length: 576)
Name: NF19182_low_2
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19182_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 37570761 - 37570565
Alignment:
| Q |
217 |
gtatttatttgatcgttgctcaagttgcattttaagagaaagggatattattcccataa-----ataatcacaatcatttgcagcctgaataccttggat |
311 |
Q |
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| T |
37570761 |
gtatttatttgatcgttgctcaagttgcattttaagagaaagggatattattcccataaataaaataatcacaatcacttgcagcctgaataccttggat |
37570662 |
T |
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| Q |
312 |
tctttgaatcagac-tgttttaattctaatacattcccaaaagaggacttattccaaactttaagctgatgcatattgcatggtgtgatgaggctta |
407 |
Q |
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| T |
37570661 |
tctttgaatcagacgtcttttagttctaatacattcccaaaagaggacttattacaaactttaagctgatgcatattccatactgtgatgaggctta |
37570565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 37570970 - 37570824
Alignment:
| Q |
3 |
atcataattgatgtcataaatattttttggaccttccgatttaatgttaattaaatggatacttaaacactttctaagaaagttggatcaaaattgagaa |
102 |
Q |
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| T |
37570970 |
atcatatttgatgtcataaatattttttggaccttccaatttaatg----ttaaatggatacgtaaacactttctaacaaagttggatc-aaattgagaa |
37570876 |
T |
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| Q |
103 |
taatatttgttagaannnnnnnaaaggactaacttgttcatagaagaccaat |
154 |
Q |
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| T |
37570875 |
taatatttgttagaatttttttaaaggactaacttgttcatagaagaccaat |
37570824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 37570566 - 37570489
Alignment:
| Q |
441 |
taaataaccccttggaaatcctcaggcagaagccaagtcacaagaaagtggtctggtctatgttatagtttttaacat |
518 |
Q |
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| T |
37570566 |
taaataaccccttggaaatcctcaggcagaagccaagtcacaagaaagtggtctggtctatgttatagtttttaacat |
37570489 |
T |
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