View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19182_low_3 (Length: 377)
Name: NF19182_low_3
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19182_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 35593932 - 35594282
Alignment:
| Q |
13 |
acaagcatcatcaaaaacttgccatgcactctcattcctatcccaccatataacaacatcaattcccatcactttcttagcatgaggtgcccttttgtca |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35593932 |
acaagcatcatcaaaaacttgccatgcgctctcattcctatcccaccatataacaacatcaattcccatcaccttcttagcatgaggtgcccttttgtca |
35594031 |
T |
|
| Q |
113 |
agatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcatcttctggttcatcatccacttcaaggttactac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35594032 |
agatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcaacttctggttcatcatccacttcaaggttactac |
35594131 |
T |
|
| Q |
213 |
tactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccacgaattaatggaagtgttgaatgcacttgtgagtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35594132 |
tactagactctgttaatggagaaggtgataaggcagtgaaaagcttgaattttgaagcgttcccacgaattaatggaagtgttgaatgcacttgtgagtt |
35594231 |
T |
|
| Q |
313 |
gaagaacatatannnnnnnaatgggatttgtggttcaagtgctattggtat |
363 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
35594232 |
gaagaacatagatttttttaatgggatttgtggttcaagtgctattggtat |
35594282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 35568025 - 35568333
Alignment:
| Q |
13 |
acaagcatcatcaaaaacttgccatgcactctcattcctatcccaccatataacaacatcaattcccatcactttcttagcatgaggtgcccttttgtca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35568025 |
acaagcatcatcaaaaacttgccatgcactctcattcctatcccaccatataacaacatcaattcccatcaccttcttagcatgaggtgcccttttgtca |
35568124 |
T |
|
| Q |
113 |
agatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcatcttctggttcatcatccacttcaaggttactac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35568125 |
agatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcaacttctggttcatcatccacttcaaggttactac |
35568224 |
T |
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| Q |
213 |
tactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccacgaattaatggaagtgttgaatgcacttgtgagtt |
312 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| || |
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| T |
35568225 |
tactagactctgttaacggagaaggtgataaggcagtgaaaagcttgaattttgaagtgttcccacgaattaatggaagtgttgaatggatttgtgactt |
35568324 |
T |
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| Q |
313 |
gaagaacat |
321 |
Q |
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|||||||| |
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| T |
35568325 |
caagaacat |
35568333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 35582756 - 35583064
Alignment:
| Q |
13 |
acaagcatcatcaaaaacttgccatgcactctcattcctatcccaccatataacaacatcaattcccatcactttcttagcatgaggtgcccttttgtca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35582756 |
acaagcatcatcaaaaacttgccatgcactctcattcctatcccaccatataacaacatcaattcccatcaccttcttagcatgaggtgcccttttgtca |
35582855 |
T |
|
| Q |
113 |
agatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcatcttctggttcatcatccacttcaaggttactac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35582856 |
agatcacatattggcatcaaaggataccactgtgagtaccagtcaaatttctctgaacctgtttcaacttctggttcatcatccacttcaaggttactac |
35582955 |
T |
|
| Q |
213 |
tactagactctgttaatggagaaggtgataaggcggtgaaaagcttgaattttgaagcgttcccacgaattaatggaagtgttgaatgcacttgtgagtt |
312 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| || |
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| T |
35582956 |
tactagactctgttaacggagaaggtgataaggcagtgaaaagcttgaattttgaagtgttcccacgaattaatggaagtgttgaatggatttgtgactt |
35583055 |
T |
|
| Q |
313 |
gaagaacat |
321 |
Q |
| |
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|||||||| |
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| T |
35583056 |
caagaacat |
35583064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 26859991 - 26859934
Alignment:
| Q |
251 |
aaaagcttgaattttgaagcgttcccacgaattaatggaagtgttgaatgcacttgtg |
308 |
Q |
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|||||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||| |
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| T |
26859991 |
aaaagcttaaattttgaagtgttcccacgaattaatggatgtgatgaatgcaattgtg |
26859934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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