View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19182_low_5 (Length: 358)
Name: NF19182_low_5
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19182_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 54339783 - 54340125
Alignment:
| Q |
1 |
aatgtaaccaacatattctctaacgtactatcaaacagcaaagacattagagtcannnnnnnc-cctcgcatgtacatttgttgcataatgttattggat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54339783 |
aatgtaaccaacatattctctaacgtactatcaaacagcaaagacattagagtcatttttttttcctcgcatgtacatttgttgcataatgttattggat |
54339882 |
T |
|
| Q |
100 |
ttttggtcccctagctagagttcatgtgttagcttctaactatgatgtgaatagtaaactgtaatggggtatactgctaccatatccctagtaagtacct |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| || |
|
|
| T |
54339883 |
ttttggtcccctggctagagttcatgtgttagcttctaactatggtgtgaatagtaaactgtaatggggtatactgctaccatgtccctagtacgtatct |
54339982 |
T |
|
| Q |
200 |
aagttaggaaccaacaattatt---ataagtttggatttgaaatcatcttcatgacgaagatatgatcatcgtgacgaaaatgatgacccaaaggtattg |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54339983 |
aagttaggaaccaacaattattataataagtttggatttgaaatcatcttcatgacgaagatatgatcatcgtgacgaaaatgatgacccaaaggtattg |
54340082 |
T |
|
| Q |
297 |
attgtttgttaaaatgagttgcagcactaatatatgtttgata |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54340083 |
attgtttgttaaaatgagttgcagcactaatatatgttcgata |
54340125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University