View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19182_low_7 (Length: 328)

Name: NF19182_low_7
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19182_low_7
NF19182_low_7
[»] chr5 (4 HSPs)
chr5 (117-302)||(35140209-35140401)
chr5 (119-195)||(15958009-15958085)
chr5 (119-195)||(37183566-37183642)
chr5 (119-167)||(40619770-40619818)
[»] chr8 (3 HSPs)
chr8 (119-195)||(8885237-8885313)
chr8 (119-167)||(14163842-14163890)
chr8 (119-167)||(42280676-42280724)
[»] chr7 (1 HSPs)
chr7 (119-167)||(37518048-37518096)
[»] chr4 (2 HSPs)
chr4 (119-167)||(48318849-48318897)
chr4 (119-195)||(54631277-54631353)
[»] chr3 (3 HSPs)
chr3 (119-167)||(14828701-14828749)
chr3 (119-195)||(29048628-29048704)
chr3 (119-195)||(51258702-51258778)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 117 - 302
Target Start/End: Complemental strand, 35140401 - 35140209
Alignment:
Q  117 gagtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga-nnnnnnngtcttcttctgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         ||||||||||||    
T  35140401 gagtctaaatgatggaattttgtattttaagaggcgaagtcccgtaagaagccgtttcaacgggagtgatgatccttgattttttttttcttcttctgat 35140302  T
Q  216 ctt------aagtttcagaaaaatctgatcaagttgtcgaaaaattgaattttccactaggacacagcggaaacagcaaacaatgacctaaca 302  Q
    |||      |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  35140301 cttctgagaaagtttcagagaaatctgatcaagttgtcgaaaaatcgaattttccactaggacatagcggaagcagcaaacaatgacctaaca 35140209  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 15958085 - 15958009
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga 195  Q
    ||||||| |||| ||||||| ||||| |||||||||||||  ||||||| || ||| | |||||| ||| |||||||    
T  15958085 gtctaaacgatgaaattttggattttgagaggcgaagtcccataagaagtcgcttctaagggagttatggtccttga 15958009  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 37183566 - 37183642
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga 195  Q
    |||||||||||||||||||| ||||| || |||| ||||| |||||| | |  ||| |||||||| ||| |||||||    
T  37183566 gtctaaatgatggaattttggattttgaggggcggagtcccgtaagatgtcccttctacgggagtcatggtccttga 37183642  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 40619770 - 40619818
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaag 167  Q
    |||||||||||||||||||| ||||| || |||| ||||| ||||||||    
T  40619770 gtctaaatgatggaattttggattttgaggggcggagtcccgtaagaag 40619818  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 8885237 - 8885313
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga 195  Q
    |||||||||||||||||||| ||||| || |||| |||||||||||||| |  ||| |||||||| ||| |||||||    
T  8885237 gtctaaatgatggaattttggattttgaggggcggagtcctgtaagaagtcccttctacgggagtcatggtccttga 8885313  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 14163842 - 14163890
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaag 167  Q
    ||||||||||||||||||| |||||| || |||| ||||| ||||||||    
T  14163842 gtctaaatgatggaattttttattttgaggggcggagtcccgtaagaag 14163890  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 42280676 - 42280724
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaag 167  Q
    ||||||| |||||||||||| ||||| || |||| ||||||||||||||    
T  42280676 gtctaaacgatggaattttggattttgaggggcggagtcctgtaagaag 42280724  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 37518048 - 37518096
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaag 167  Q
    ||||||| |||||||||||| ||||| || |||| ||||||||||||||    
T  37518048 gtctaaacgatggaattttggattttgaggggcggagtcctgtaagaag 37518096  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 48318849 - 48318897
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaag 167  Q
    ||||||| |||||||||||| ||||| || |||| ||||||||||||||    
T  48318849 gtctaaacgatggaattttggattttgaggggcggagtcctgtaagaag 48318897  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 54631277 - 54631353
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga 195  Q
    ||||||| |||||||||||||||||| ||  ||| ||||| |||||||| | |||| | |||||| ||| |||||||    
T  54631277 gtctaaacgatggaattttgtattttgaggtgcggagtcccgtaagaagtcctttctatgggagtcatggtccttga 54631353  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 14828701 - 14828749
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaag 167  Q
    ||||||| |||||||||||| ||||| | ||||| ||||||||||||||    
T  14828701 gtctaaacgatggaattttggattttgaaaggcggagtcctgtaagaag 14828749  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 29048704 - 29048628
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga 195  Q
    ||||||| |||||||||||| ||||| || |||| ||||| |||| ||| | |||| ||||||||  ||||||||||    
T  29048704 gtctaaacgatggaattttggattttgaggggcggagtcccgtaataagtcctttctacgggagtcttgatccttga 29048628  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 51258778 - 51258702
Alignment:
Q  119 gtctaaatgatggaattttgtattttaagaggcgaagtcctgtaagaagccgtttcaacgggagtgatgatccttga 195  Q
    ||||||| |||| ||||||| ||||| || |||| ||||| |||||||| |  ||| |||||||| |||||||||||    
T  51258778 gtctaaacgatgaaattttggattttgaggggcggagtcccgtaagaagtcccttctacgggagtcatgatccttga 51258702  T

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