View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19182_low_9 (Length: 296)

Name: NF19182_low_9
Description: NF19182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19182_low_9
NF19182_low_9
[»] chr4 (1 HSPs)
chr4 (1-296)||(43639937-43640232)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 43640232 - 43639937
Alignment:
Q  1 atagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggttctttcagagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43640232 atagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggttctttcagagctt 43640133  T
Q  101 gtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacatgtttatacattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43640132 gtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacatgtttatacattca 43640033  T
Q  201 tgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaaaacaatacc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43640032 tgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaaaacaatacc 43639937  T

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