View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19183_high_5 (Length: 403)

Name: NF19183_high_5
Description: NF19183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19183_high_5
NF19183_high_5
[»] chr4 (7 HSPs)
chr4 (24-397)||(26647125-26647520)
chr4 (28-98)||(13669681-13669751)
chr4 (28-98)||(13682538-13682608)
chr4 (126-172)||(13669607-13669653)
chr4 (126-172)||(13682464-13682510)
chr4 (28-72)||(13687186-13687230)
chr4 (28-72)||(13689138-13689182)
[»] chr8 (3 HSPs)
chr8 (32-297)||(37001976-37002241)
chr8 (32-269)||(36992259-36992500)
chr8 (296-396)||(37002274-37002374)
[»] chr7 (2 HSPs)
chr7 (126-199)||(8596984-8597057)
chr7 (47-101)||(8596901-8596959)
[»] chr1 (1 HSPs)
chr1 (299-396)||(12796262-12796358)
[»] chr3 (2 HSPs)
chr3 (299-383)||(27442791-27442874)
chr3 (299-383)||(27445947-27446030)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 397
Target Start/End: Original strand, 26647125 - 26647520
Alignment:
Q  24 tttctttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnn 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||               
T  26647125 tttctttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcagacaaaaaacttgagggagtgtgacgcccgttttttttttt 26647224  T
Q  124 nn--gaataacaaaatatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaa 221  Q
        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26647225 tgttgaataacaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagactcctacaaaa 26647324  T
Q  222 gcatcaaatacaaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttacttagctat---------------------attat 300  Q
    |||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||                     |||||    
T  26647325 gcataaaatacaaacttagactcctgcaacgttggtacaacatttgtactgttgaaa-tgatttacttagctatattgttcctatcctgtaattaattat 26647423  T
Q  301 tcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctctc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647424 tcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctctc 26647520  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 13669751 - 13669681
Alignment:
Q  28 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagg 98  Q
    ||||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13669751 tttcatgaaagcacagaagctgcaaatattgaaaaatcatattagttaattagcaaacaaaaaatttgagg 13669681  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 13682608 - 13682538
Alignment:
Q  28 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagg 98  Q
    ||||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13682608 tttcatgaaagcacagaagctgcaaatattgaaaaatcatattagttaattagcaaacaaaaaatttgagg 13682538  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 13669653 - 13669607
Alignment:
Q  126 gaataacaaaatatgggtttcaaaatttcatttctcataaattaaga 172  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  13669653 gaataacagaacatgggtttcaaaatttcatttctcataaattaaga 13669607  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 13682510 - 13682464
Alignment:
Q  126 gaataacaaaatatgggtttcaaaatttcatttctcataaattaaga 172  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  13682510 gaataacagaacatgggtttcaaaatttcatttctcataaattaaga 13682464  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 13687230 - 13687186
Alignment:
Q  28 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttag 72  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  13687230 tttcatgaaagcacagaatctgcaaatattgaaaaatcatattag 13687186  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 13689182 - 13689138
Alignment:
Q  28 tttcatgaaagtacaaaatctgcaaatattgaaaaatcatgttag 72  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  13689182 tttcatgaaagcacagaatctgcaaatattgaaaaatcatattag 13689138  T

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Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 32 - 297
Target Start/End: Original strand, 37001976 - 37002241
Alignment:
Q  32 atgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnnnngaataa 131  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||             ||||||    
T  37001976 atgaaagtacagaatctgcaaatattgaaaaatcatattagttaattagcaaacaaaaaatttgagggagtgtgacgaccgttttttttttgttgaataa 37002075  T
Q  132 caaaatatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaata 231  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  37002076 caaaacatgggtttcaaaatttcatttctcataaattaagagtataacatttaaattcacaacatttatacaacatagactcctacaaaagcatcaaata 37002175  T
Q  232 caaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttacttagctatat 297  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37002176 caaacttagactcctgcaacgtttgtacaacatttgtactgttgaaactgatttacttagctatat 37002241  T

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Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 36992259 - 36992500
Alignment:
Q  32 atgaaagtacaaaatctgcaaatattgaaaaatcatgttagttaattagcaaacaaaaaacttgagggagcgtgacgcccgnnnnnnnnnnnnng----- 126  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  |||||  || ||||||||||                       
T  36992259 atgaaagtacagaatctgcaaatattgaaaaatcatattagttaattagcaaacaaaaagtttgag--agtgtgacgcccgatttttttttttttttttt 36992356  T
Q  127 -aataacaaaatatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcat 225  Q
     |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36992357 taataacaaaacatgggtttcaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttgtacaacatagactcctacaaaagcat 36992456  T
Q  226 caaatacaaacttagactcctacaacgtttgtacaacatctgta 269  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  36992457 caaatacaaacttagactcctgcaacgtttgtacaacatttgta 36992500  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 37002274 - 37002374
Alignment:
Q  296 attattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 395  Q
    ||||||||||||| | ||| ||||| | |||||||||||||||  ||||||||||||| ||| ||| | || |||||||||||||||| |||||||||||    
T  37002274 attattcctatttgttagggagtgctaatggaattgacttagtgtttccacaattcacatttaagttagtgtagtcattttatttagttgttttcatctc 37002373  T
Q  396 t 396  Q
    |    
T  37002374 t 37002374  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 8596984 - 8597057
Alignment:
Q  126 gaataacaaaatatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttg 199  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8596984 gaataacaaaacatgggttccaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttg 8597057  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 8596901 - 8596959
Alignment:
Q  47 ctgcaaatattgaaaaatcat----gttagttaattagcaaacaaaaaacttgagggag 101  Q
    |||||||||||||||||||||     ||||||||||||||||||||||| || ||||||    
T  8596901 ctgcaaatattgaaaaatcatattaattagttaattagcaaacaaaaaattttagggag 8596959  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 12796262 - 12796358
Alignment:
Q  299 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctct 396  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| |||||| | ||| ||||||    
T  12796262 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagttggttttatctct 12796358  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 27442791 - 27442874
Alignment:
Q  299 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 383  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27442791 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27442874  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 27445947 - 27446030
Alignment:
Q  299 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 383  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27445947 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27446030  T

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