View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19183_high_6 (Length: 386)
Name: NF19183_high_6
Description: NF19183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19183_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 41426262 - 41425906
Alignment:
| Q |
19 |
gttacttgctttgagaggacaaagaaagcaacgcacatatacaattttatttaaaaaagatgtgtgataaattacacgtcacgattcatcaagggttcgt |
118 |
Q |
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| T |
41426262 |
gttacttgctttgagaggacaaagaaagcaacgcacatatacaattttatttaaaaaagatgtgtgataaattacacgtcacgattcatcaagggttcgt |
41426163 |
T |
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| Q |
119 |
tttgataattgatagtgagagactaaaactgaaagttcaatacaaatccaactctataattaattgtattattttaactaaaatccaatgctaaacgtcc |
218 |
Q |
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| T |
41426162 |
tttgataattgatagtgagagactaaaactgaaagttcaatacaaatccaactctataattaattgtattattttaactaaaatccaatgctaaacgtcc |
41426063 |
T |
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| Q |
219 |
attgaaaacaaaactggagttaataatagatagcgatagagatattgatgaatgatgactgatgagaaatatctttgcaatttctttcaaaatatcagga |
318 |
Q |
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| T |
41426062 |
attgaaaacaaaaatggagttaataatagatagcggtagagatattgatgaatg-------atgagaaatatctttgcaatttctttcaaaatatcagga |
41425970 |
T |
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| Q |
319 |
ttaaattttcaccacatagactgttaatgtgtattgttaagtgttcaagtgttctctgctcctc |
382 |
Q |
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| T |
41425969 |
ttaaattttcaccacatagactgttaatgtgtattgttaagtgttcaagtgttctctggtcctc |
41425906 |
T |
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