View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19183_low_11 (Length: 258)

Name: NF19183_low_11
Description: NF19183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19183_low_11
NF19183_low_11
[»] chr4 (8 HSPs)
chr4 (21-243)||(26646911-26647134)
chr4 (36-152)||(13682689-13682805)
chr4 (64-152)||(13669832-13669920)
chr4 (36-155)||(13689257-13689373)
chr4 (36-141)||(22188262-22188367)
chr4 (118-155)||(13687305-13687342)
chr4 (169-211)||(13669772-13669814)
chr4 (169-211)||(13682629-13682671)
[»] chr8 (2 HSPs)
chr8 (64-155)||(36992080-36992171)
chr8 (64-155)||(37001797-37001888)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 26646911 - 26647134
Alignment:
Q  21 acatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataata 120  Q
    ||||||||||||| |||||||||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26646911 acatcatcatcaaccaccaactcaaaacaatctttctcaattatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgcataata 26647010  T
Q  121 tctccattagcaaaggagatgtcacaacaccatct-nnnnnnnttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcat 219  Q
    |||||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |    
T  26647011 tctccattagcaaaggagatgtcacaacaccatctataaaaaattcatgcaccaaggcttccttaattacatcttccttttcccgaatcattatgttcgt 26647110  T
Q  220 tgaacttgtgccactttctttcat 243  Q
    ||||||| ||||||||||||||||    
T  26647111 tgaacttttgccactttctttcat 26647134  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 13682805 - 13682689
Alignment:
Q  36 accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag 135  Q
    ||||||||||||| || |||||  | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| |||||||||||||    
T  13682805 accaactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaag 13682706  T
Q  136 gagatgtcacaacacca 152  Q
    |||||||||||||||||    
T  13682705 gagatgtcacaacacca 13682689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 13669920 - 13669832
Alignment:
Q  64 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacacca 152  Q
    ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13669920 tgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacacca 13669832  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 13689373 - 13689257
Alignment:
Q  36 accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag 135  Q
    ||||||||||||| || |||||  | | ||||||||||| |||||| ||||||||| | |||||||| | |||||| |||||   | |||||||||||||    
T  13689373 accaactcaaacctattttccttgattctgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtata---tgtccattagcaaag 13689277  T
Q  136 gagatgtcacaacaccatct 155  Q
    ||||||||||||||||||||    
T  13689276 gagatgtcacaacaccatct 13689257  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 22188262 - 22188367
Alignment:
Q  36 accaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaag 135  Q
    |||||| |||||| || ||||| || | | |||| ||||  ||||||||||||||| |||||||||| |||||||| ||||||||| ||||||| |||||    
T  22188262 accaacccaaacctattttcctcaattctaacaaccttagacgtagtattgttagcatttattgattgataaccattgtataatatgtccattatcaaag 22188361  T
Q  136 gagatg 141  Q
    ||||||    
T  22188362 gagatg 22188367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 13687342 - 13687305
Alignment:
Q  118 atatctccattagcaaaggagatgtcacaacaccatct 155  Q
    |||| |||||||||||||||||||||||||||||||||    
T  13687342 atatgtccattagcaaaggagatgtcacaacaccatct 13687305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 13669814 - 13669772
Alignment:
Q  169 caccaaggcttccttaattacatcttccttttcccaaatcatt 211  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  13669814 caccaaggcttccttaattacatcttcttcttcccaaaacatt 13669772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 13682671 - 13682629
Alignment:
Q  169 caccaaggcttccttaattacatcttccttttcccaaatcatt 211  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  13682671 caccaaggcttccttaattacatcttcttcttcccaaaacatt 13682629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 36992080 - 36992171
Alignment:
Q  64 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatct 155  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  36992080 tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatct 36992171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 37001797 - 37001888
Alignment:
Q  64 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatct 155  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  37001797 tgacaaacttagccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatct 37001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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