View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19183_low_2 (Length: 593)
Name: NF19183_low_2
Description: NF19183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19183_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 4 - 576
Target Start/End: Original strand, 34880114 - 34880688
Alignment:
| Q |
4 |
atcattggcatacaatatgagcgaattccccatcacagtaactgctgataggtaaaggcacagctacgaattatcggttcatgtttctcttatgcggtag |
103 |
Q |
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| T |
34880114 |
atcattggcatacaatatgagcgaattccccatcacaataactgctgataggtaaaggcacagctacgaattatcggttcatgtttctcttatgcggtag |
34880213 |
T |
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| Q |
104 |
ccagcttcctagagtacacaatgtacataggatccgagcgtccaggatttggagaaatatccacagcctacnnnnnnnnnn--gttacattgacctcaga |
201 |
Q |
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| T |
34880214 |
ccagcttcctagagtacacaatgtacatgggatccgagcgtccaggatttggagaaatatccacagcctacaaaaaaaaaaaagttacattgacctcaga |
34880313 |
T |
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| Q |
202 |
attgataacactgtcacatgatcacatcatatacaatcaaatttgtactttcaaatttgtttcatgattagcgaaagaaattatgttttatataggggaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880314 |
attgataacactgtcacatgatcacatcatatacaatcaaatttgtactttcaaatttgtttcatgattagcgaaagaaattatgttttatataggggaa |
34880413 |
T |
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| Q |
302 |
aaagcagctgaattaattaaccttctgtcctgctttattttaaagcatactatttggtttgttaataaataatagctgatctttgtcaaaatattttgtt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880414 |
aaagcagctgaattaattaaccttctgtcctgctttattttaaagcatactatttggtttgttaataaataatagctgatctttgtcaaaatattttgtt |
34880513 |
T |
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| Q |
402 |
attacaaaaagggaaatgccaattaataagaatagaagtctcagaaaaactgcacatatatcaatatcatgcgacacattatcatcacaagtttccctcc |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34880514 |
attacaaaaagggaaatgccaattaataagaatagaagtctcagaacaactgcacatatatcaatatcatgtgacacattatcatcacaagtttccctcc |
34880613 |
T |
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| Q |
502 |
atgatcagttattgattcaagtattacaacaacatgaatgtatcacaaatggttagttttgttggtgctagagtt |
576 |
Q |
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|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34880614 |
atgatcagctatcgattcaagtattacaacgacatgaatgtatcacaaatggttagttttgttggtgctagagtt |
34880688 |
T |
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