View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19183_low_3 (Length: 519)

Name: NF19183_low_3
Description: NF19183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19183_low_3
NF19183_low_3
[»] chr4 (3 HSPs)
chr4 (19-519)||(43608208-43608704)
chr4 (261-311)||(34979239-34979289)
chr4 (259-311)||(13901179-13901231)
[»] chr5 (1 HSPs)
chr5 (259-348)||(34221340-34221429)
[»] chr7 (4 HSPs)
chr7 (259-334)||(20909999-20910074)
chr7 (277-334)||(20909314-20909371)
chr7 (261-309)||(1818313-1818361)
chr7 (170-226)||(3761029-3761085)
[»] chr2 (3 HSPs)
chr2 (259-348)||(30934154-30934243)
chr2 (261-360)||(24667755-24667854)
chr2 (271-359)||(21534712-21534800)
[»] chr1 (1 HSPs)
chr1 (259-321)||(34152470-34152532)
[»] scaffold0363 (1 HSPs)
scaffold0363 (259-334)||(16238-16313)
[»] scaffold0148 (1 HSPs)
scaffold0148 (259-334)||(33913-33988)
[»] chr8 (2 HSPs)
chr8 (259-334)||(14402540-14402615)
chr8 (273-349)||(27656288-27656364)


Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 43608208 - 43608704
Alignment:
Q  19 catgtagcttatgaccctccttcttgagccaaattaagttccgacttcaagttcaccatgctccatttttgattcattgttcgctttataacttgtgaac 118  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43608208 catgtagcttatgaccctccttcttgagccaaa----gttccgacttcaagttcaccatgctccatttttgattcattgttcgctttataacttgtgaac 43608303  T
Q  119 ctgtgtaacctttttcggatttgttgggggcatggagtgtatgttatatagtaaaatcagtacagccttactcctacctcctattcattcatcacgttcc 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43608304 ctgtgtaacctttttcagatttgttgggggcatggagtgtatgttatatagtaaaatcagtacagccttactcctacctcctattcattcatcacgttcc 43608403  T
Q  219 ataaaaaatataccaaaagtttgttacccaaatcattgcatcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaa 318  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43608404 ataaaaaatctaccacaagtttgttacccaaatctttgcatcaaatcattgaagaaggattggtagaagatttttacacacgtttgacgtcaaaaatcaa 43608503  T
Q  319 gtaatgtatcttttaatctatttacatttgttcatttttctggcaannnnnnnnnattttcctgacatgcatcccaactataattaactaccgctggcat 418  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||| |||    
T  43608504 gtaatgtatcttttaatctgtttacatttgttcatttttctggcaatttttttatatttttctgacatgcatcccaactataattaactaccgctgccat 43608603  T
Q  419 cagaattcagtagtagttaactaccattgtggccttgaatttttcaattttacaacagcaactggccgcagaagtttacatcatgtgtcttggcttaatc 518  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  43608604 cagaattcagttgtagttaactaccattgtggccttgaatttttcaattttacaacagcaactggcagcagaagtttacatcatgtgtcttagcttaatc 43608703  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 34979239 - 34979289
Alignment:
Q  261 aaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaa 311  Q
    |||||||| ||||||||||| |||||||||| ||||||| |||||| ||||    
T  34979239 aaatcattgaagaaggattgctagaaggtttctacacacatttgacatcaa 34979289  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 13901231 - 13901179
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaa 311  Q
    ||||||||||  |||| ||||| |||||||||| ||||||| |||||||||||    
T  13901231 tcaaatcattggagaatgattgctagaaggtttctacacacatttgacgtcaa 13901179  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 34221340 - 34221429
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaatctatttacatttg 348  Q
    |||||||||||||||||||||| ||||||  || ||||||| |||||||| || || ||||||||| ||||||||| | |||||||||||    
T  34221340 tcaaatcattaaagaaggattgttagaagacttctacacacatttgacgttaataaacaagtaatgcatcttttaaccgatttacatttg 34221429  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 20910074 - 20909999
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaa 334  Q
    ||||||||||  |||| ||||| |||||||||||||||||  |||||||||||||| || |||||| |||||||||    
T  20910074 tcaaatcattggagaatgattgatagaaggtttttacacatatttgacgtcaaaaaacaggtaatgaatcttttaa 20909999  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 20909371 - 20909314
Alignment:
Q  277 attggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaa 334  Q
    |||| |||||||||| ||||||| |||||||||||||| |||| |||| |||||||||    
T  20909371 attgctagaaggtttctacacacatttgacgtcaaaaaacaaggaatgaatcttttaa 20909314  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 1818361 - 1818313
Alignment:
Q  261 aaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtc 309  Q
    |||||||| ||||||||||| ||||| |||| ||||| |||||||||||    
T  1818361 aaatcattgaagaaggattgttagaaagtttctacactcgtttgacgtc 1818313  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 3761029 - 3761085
Alignment:
Q  170 taaaatcagtacagccttactcctacctcctattcattcatcacgttccataaaaaa 226  Q
    ||||| ||||||| |  |||||||||||||||||||| |||||| |||| |||||||    
T  3761029 taaaaccagtacaccactactcctacctcctattcatccatcactttccctaaaaaa 3761085  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 30934154 - 30934243
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaatctatttacatttg 348  Q
    |||||||||| ||||||||||| |||| ||||| ||||||| ||| | |||||||| ||  |||||||| ||||||||  ||||||||||    
T  30934154 tcaaatcattgaagaaggattgttagatggtttctacacacatttaatgtcaaaaaacagataatgtatattttaatccctttacatttg 30934243  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 24667755 - 24667854
Alignment:
Q  261 aaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaatctatttacatttgttcatttttctg 360  Q
    |||||||| ||||| ||||| |||||||||| ||||||  ||||||||||| || || |||||| ||||| |||  | ||||||||| || |||||||||    
T  24667755 aaatcattgaagaaagattgctagaaggtttatacacatatttgacgtcaagaaacaggtaatgcatcttgtaaattgtttacatttttttatttttctg 24667854  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 21534712 - 21534800
Alignment:
Q  271 agaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaatctatttacatttgttcatttttct 359  Q
    |||||||||  |||||||||| ||||||| |||||| |||||||  | |||||| |  |||||| |  ||||||||||| |||||||||    
T  21534712 agaaggatttctagaaggtttctacacacatttgacatcaaaaaataggtaatgcaaattttaacccgtttacatttgtgcatttttct 21534800  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 34152532 - 34152470
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagta 321  Q
    |||||||||  |||||| ||||||||||||||| ||||| | |||||||||||||| ||||||    
T  34152532 tcaaatcatagaagaagaattggtagaaggtttctacactcttttgacgtcaaaaaacaagta 34152470  T

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Target: scaffold0363 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 16238 - 16313
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaa 334  Q
    |||||||| |||| |||||||| |||| | ||| ||||||| ||||||||||| || || ||| ||||||||||||    
T  16238 tcaaatcaataaaaaaggattgctagatgatttctacacacatttgacgtcaagaaacatgtagtgtatcttttaa 16313  T

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Target: scaffold0148 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 33913 - 33988
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaa 334  Q
    |||||||||| || || ||||| || ||||||| ||||||| ||||||||||| || || |||||| |||||||||    
T  33913 tcaaatcattgaataatgattgttaaaaggtttctacacacatttgacgtcaagaaacaggtaatgcatcttttaa 33988  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 14402615 - 14402540
Alignment:
Q  259 tcaaatcattaaagaaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaa 334  Q
    |||||||| |||| |||||||| |||| | ||| ||||||| ||||||||||| || || ||| ||||||||||||    
T  14402615 tcaaatcaataaaaaaggattgctagatgatttctacacacatttgacgtcaagaaacatgtagtgtatcttttaa 14402540  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 27656288 - 27656364
Alignment:
Q  273 aaggattggtagaaggtttttacacacgtttgacgtcaaaaatcaagtaatgtatcttttaatctatttacatttgt 349  Q
    |||||||  ||||||||||  |||||| ||||||||||| || ||||||||  ||||||||| |  |||||||||||    
T  27656288 aaggattactagaaggtttggacacacatttgacgtcaagaaacaagtaatacatcttttaaaccgtttacatttgt 27656364  T

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