View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19183_low_9 (Length: 288)
Name: NF19183_low_9
Description: NF19183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19183_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 31060114 - 31060367
Alignment:
| Q |
16 |
acagaggacgcacaaaaattcttacagtaatttttgacaaaacattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060114 |
acagaggacgcacaaaaattcttacagtaatttttgacaaaacattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtc |
31060213 |
T |
|
| Q |
116 |
nnnnnnntatatcctttaacgtataatcttctaaaccatcgaagctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatag |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31060214 |
aaaaaa-tatatcctttaacatataatcttctaaaccatcgaagctgattctcgattcctgctgcacttgaactttgggaattttctctaatttcaatag |
31060312 |
T |
|
| Q |
216 |
tgcactcctctggtcttgttttgtcctctcagataagtaacaaccaaggactttc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060313 |
tgcactcctctggtcttgttttgtcctctcagataagtaacaaccaaggactttc |
31060367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 20810880 - 20810671
Alignment:
| Q |
58 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcnnnnnnntatatcctttaacgtataatcttctaaaccatcga |
157 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |
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| T |
20810880 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtc-aagaaatatgtccttttgcgtataatcttctaaaccatcat |
20810782 |
T |
|
| Q |
158 |
agctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaaca |
257 |
Q |
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| T |
20810781 |
agctgattctcaatatctgttgcacatcattgttgggaattttctctaattttgatagtgcacatctccattcttgttccgtcctctcagataagtaacg |
20810682 |
T |
|
| Q |
258 |
accaaggactt |
268 |
Q |
| |
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|||||||||| |
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| T |
20810681 |
tccaaggactt |
20810671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 20837235 - 20837026
Alignment:
| Q |
58 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcnnnnnnntatatcctttaacgtataatcttctaaaccatcga |
157 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||| |
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| T |
20837235 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtc-aagaaatatgtcctgtttcgtataatcttctaaaccatcat |
20837137 |
T |
|
| Q |
158 |
agctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaaca |
257 |
Q |
| |
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||||||||||| || ||||||||| | | |||||||||||||||||| | ||||||| ||| |||| || |||||||||||||||||||| |
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| T |
20837136 |
agctgattctcaatatctgttgcacatcattgttgggaattttctctaatatttgtagtgcatctctccattctttttccgtcctctcagataagtaaca |
20837037 |
T |
|
| Q |
258 |
accaaggactt |
268 |
Q |
| |
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|||||||||| |
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|
| T |
20837036 |
tccaaggactt |
20837026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 31174624 - 31174462
Alignment:
| Q |
58 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcnnnnnnntatatcctttaacgtataatcttctaaaccatcga |
157 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||| |
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| T |
31174624 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtc-aagaaatatatccttttcagtataatcttctaagccgtcgt |
31174526 |
T |
|
| Q |
158 |
agctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcact |
221 |
Q |
| |
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||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
31174525 |
agctgattctcagtttctgttgcacttgattgttgggaattttctctaattttgatagtgcact |
31174462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 268
Target Start/End: Original strand, 3399924 - 3400133
Alignment:
| Q |
58 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcnnnnnnntatatcctttaacgtataatcttctaaaccatcga |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||||| ||||||||| |
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| T |
3399924 |
cattaagtatctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtc-aagaaatatgtccttttgtgtataatcttgtaaaccatcat |
3400022 |
T |
|
| Q |
158 |
agctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaaca |
257 |
Q |
| |
|
||||||||||| || ||||||||||| | |||||||||||||||||||| |||||||||| ||| ||| | ||||||||| |||||||||| |
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| T |
3400023 |
agctgattctcaatatctgttgcacttcattgttgggaattttctctaattttgatagtgcacttctccattctcgggttgtcctctttgataagtaact |
3400122 |
T |
|
| Q |
258 |
accaaggactt |
268 |
Q |
| |
|
|||||||||| |
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| T |
3400123 |
tccaaggactt |
3400133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 268
Target Start/End: Original strand, 3326287 - 3326496
Alignment:
| Q |
58 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcnnnnnnntatatcctttaacgtataatcttctaaaccatcga |
157 |
Q |
| |
|
|||| |||||||||||||| || ||||| | ||| || || ||||||||||||||||| |||||| ||| | ||| ||| | |||||||||| |
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| T |
3326287 |
catttagtatctctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaa-tatatctttttccatatcatcctttaaaccatcgt |
3326385 |
T |
|
| Q |
158 |
agctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaaca |
257 |
Q |
| |
|
|||| |||||| || || |||||||||| | ||||||||| ||||||||||||| ||| |||| || |||||||||||||||||| ||||||| | |
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| T |
3326386 |
agctaattctcagtttctcttgcacttgatcattgggaattctctctaatttcaagagtacacttatccattcttgttttgtcctctcatataagtatga |
3326485 |
T |
|
| Q |
258 |
accaaggactt |
268 |
Q |
| |
|
||||||||||| |
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|
| T |
3326486 |
accaaggactt |
3326496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 268
Target Start/End: Original strand, 8373034 - 8373243
Alignment:
| Q |
58 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcnnnnnnntatatcctttaacgtataatcttctaaaccatcga |
157 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
8373034 |
cattaaggatctctgtgacatcaactctgttctttccaatgaagaaacaacatatgtc-aagaaatatatccttttctgtataatcttctaaaccatcat |
8373132 |
T |
|
| Q |
158 |
agctgattctcgattcctgttgcacttgaactttgggaattttctctaatttcaatagtgcactcctctggtcttgttttgtcctctcagataagtaaca |
257 |
Q |
| |
|
||||||||||| || |||| |||||| |||||||||||| |||||| ||| |||||| ||| ||||||| |||||||| |||||||||| | |
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|
| T |
8373133 |
agctgattctcaatatctgtagcacttcgttgttgggaattttcgttaattttgataatgcacttctccattcttgttctgtcctcttagataagtaaga |
8373232 |
T |
|
| Q |
258 |
accaaggactt |
268 |
Q |
| |
|
|||||||||| |
|
|
| T |
8373233 |
tccaaggactt |
8373243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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