View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19184_high_11 (Length: 269)
Name: NF19184_high_11
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 25792865 - 25792628
Alignment:
| Q |
14 |
gaaacgaaagtcaaaaattacctgatcatacaaccaaaaatcttacaattagaaaaggaatgtatacttttcgtttttgataagctaatgttagtagtta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
25792865 |
gaaacgaaagtcaaaaattacctgatcatacaaccaaaaatcttacaattagaaaaggaatgtataccttttg-ttttgataagctaatgttagtagtta |
25792767 |
T |
|
| Q |
114 |
gtttgttacagggagataattttttagc-------gatcaaacacaaactttcatttttaatactccttcaacgtcccaacccaaaagcgtaacattagt |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25792766 |
gtttgttacagggagataatttgttagcgagcagagatcaaacacaaactttcatttttaatactccttcaacgtcccaacccaaaagcgtaacattagt |
25792667 |
T |
|
| Q |
207 |
atctcaatttgtagtcaatgtgaccacatcgttaacgat |
245 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25792666 |
atgtcaatttgtagtcaatgtgaccacatcgttcacgat |
25792628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University