View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_high_3 (Length: 467)
Name: NF19184_high_3
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 35602448 - 35602016
Alignment:
| Q |
19 |
gttcactccgcgactaatagctcaggttaattcctacttcaacttttcatttttcacaactccatattgttattttactttctctgtttactttgttgtg |
118 |
Q |
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| T |
35602448 |
gttcactccgcgactaataactcaggttaattcctacttcaacttttcatttttcacaactccatattgttattttactttctctgattactttgttgtg |
35602349 |
T |
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| Q |
119 |
aatctgtaataatgttttcgaaatttatgttgtgaagagtgaagacctagattgaggaatagtggtgtgtgtatgatgaaaatggggggtataatttcag |
218 |
Q |
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| T |
35602348 |
aatctgtaataatgttttcgaattttatgttgtgaaga-------cctagattgaggaatagtggtgtgtgtataatgaaaatggggggtataatttcag |
35602256 |
T |
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| Q |
219 |
cacccattcgaaatgggttgttccagctaggtctcagattctaatcaacaatttcgcttgttaaatgaagcaattaggggttgaactaggtcacaactta |
318 |
Q |
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| T |
35602255 |
cacccattcgaaatgggttgttccagctaggtctcagattctaatcaacaatttcgcttgttaaatgaagcaattaggggttgaactaggtcacaactta |
35602156 |
T |
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| Q |
319 |
gtttataaaggtttcttataaagtgatttctctatgtacttgatatt-atgataaatatgcattctcttatgattctgttgcagcatttatgtaatttat |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
35602155 |
gtctataaaggtttcttataaagtgatttctctatgtacttgatattaatgataaatatgcattcaataatgattctgttgcagcatttatgtaatttat |
35602056 |
T |
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| Q |
418 |
ttagttaaatgctgtatttactaaataaaacctgcttcat |
457 |
Q |
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| T |
35602055 |
ttagttaaatgctgtatttactaaattaaacctgtttcat |
35602016 |
T |
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