View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_high_6 (Length: 428)
Name: NF19184_high_6
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 42610702 - 42610302
Alignment:
| Q |
13 |
cagacattacctcccacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagcta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42610702 |
cagacattacctcccacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagcta |
42610603 |
T |
|
| Q |
113 |
tagcaaaatttctgaaccatagcataacaccatgtcttccattaagaggtacaatcactgcatcaggtgatttaattcctttatcatatgttgctggcct |
212 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42610602 |
tagcaaaatttctgaaccataacataacaccatgtcttccattaagaggtacaatcactgcatcaggtgatttaattcctttatcatatgttgctggcct |
42610503 |
T |
|
| Q |
213 |
tttaattggaaggccaaattcaaaatctattggacctaatggacaagttctgaatgctcaagaggcttttcaactagctggaattgaaactggtttcttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42610502 |
tttaattggaaggccaaattcaaaatctattggacctaatggacaagttctgaatgctcaagaggcttttcaactagctggaattgaaactggtttcttt |
42610403 |
T |
|
| Q |
313 |
gagttgcaacctaaagaaggtttagcactagtgaatggtactgcagttggatcaggtttggcttcattggttctttttgatacaaatttactagttgttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42610402 |
gagttgcaacctaaagaaggtttagcactagtgaatggtactgcagttggatcaggtttggcttcattggttctttttgatacaaatttactagttgttc |
42610303 |
T |
|
| Q |
413 |
t |
413 |
Q |
| |
|
| |
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|
| T |
42610302 |
t |
42610302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 28185052 - 28184952
Alignment:
| Q |
277 |
gcttttcaactagctggaattgaaactggtttctttgagttgcaacctaaagaaggtttagcactagtgaatggtactgcagttggatcaggtttggctt |
376 |
Q |
| |
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||||||||||| ||||| |||| ||| ||||||||| ||||||||||| |||||| | || || || ||||| ||||| ||||| || ||||| |||| |
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| T |
28185052 |
gcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaaggtcttgctcttgttaatggaactgctgttggttctggtttagctt |
28184953 |
T |
|
| Q |
377 |
c |
377 |
Q |
| |
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| |
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|
| T |
28184952 |
c |
28184952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 40944117 - 40944200
Alignment:
| Q |
27 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
110 |
Q |
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|||||| |||||||| | |||| | || |||||||||||| | || ||||| |||||||||||||||||||||||| ||||||| |
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| T |
40944117 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
40944200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 40958089 - 40958165
Alignment:
| Q |
34 |
acaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
110 |
Q |
| |
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|||||||||| |||| | || |||||||||||| | || ||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
40958089 |
acaagagcagccatgctagtgagaatcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagc |
40958165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 40548850 - 40548951
Alignment:
| Q |
46 |
atgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagctatagcaaaatttctgaaccatagcataacaccat |
145 |
Q |
| |
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||||| || |||||||||||| | |||||||| || ||||||||||||| |||||| | ||||| || ||||| |||| ||||| | ||| ||||||| |
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| T |
40548850 |
atgttagtaagaatcaacacactccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccat |
40548949 |
T |
|
| Q |
146 |
gt |
147 |
Q |
| |
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|| |
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|
| T |
40548950 |
gt |
40548951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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