View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_low_1 (Length: 496)
Name: NF19184_low_1
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 117 - 321
Target Start/End: Complemental strand, 40287461 - 40287257
Alignment:
| Q |
117 |
gaagggtggaagtgagtaacatttgacataatcaaacaacattttaaaatattcataatctcatggacacgttttggagttagaaacaattttgatatgt |
216 |
Q |
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| T |
40287461 |
gaagggtggaagtgagtaacatttgacataatcaaacaacattttaaaatattcataatctcatggacacgttttggagttagaaacaattttgata--t |
40287364 |
T |
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| Q |
217 |
gttatttactgattaatttatcgttaaattaatattgtgttcattacttttaagtcattatatcacacttttgtc--aaaaacaaaaagtcattatatca |
314 |
Q |
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| T |
40287363 |
gttatttactgattaaattatcattaaattaatattgtgttcattacttttaagtcattatatcacacttttgtcaaaaaaaaaaaaagtcattatatca |
40287264 |
T |
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| Q |
315 |
cactata |
321 |
Q |
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| T |
40287263 |
cactata |
40287257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 40287172 - 40287099
Alignment:
| Q |
403 |
tttttaggcatacaagcctaaaaaatgttataaaaagggtattagaagtgtctcaatgaaatgaatatgaaagg |
476 |
Q |
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| T |
40287172 |
tttttaggcatacaagccaaaaaaatgttataaaaagggtattagaagtgtctccatgaaatgaatatgaaagg |
40287099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 3914818 - 3914874
Alignment:
| Q |
123 |
tggaagtgagtaacatttgacataatcaaacaacattttaaaatattcataatctca |
179 |
Q |
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| T |
3914818 |
tggaattgagtaacatttgacagaatcgaagaccaatttgaaatattcataatctca |
3914874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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