View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_low_18 (Length: 243)
Name: NF19184_low_18
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13590247 - 13590469
Alignment:
| Q |
1 |
tcctctctcatttcattgactcttctcttacaatccatccacaaagttcatccnnnnnnnctcaaaaccaatcccccttttatcataaagaattcaattt |
100 |
Q |
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| T |
13590247 |
tcctctctcatttcattgactcttctcttacaatccatccacaaagttcatccaaaaaaactcaaaaccaatcccccttttatcataaagaattcaattt |
13590346 |
T |
|
| Q |
101 |
atgataaagaattgaattttgtttctacacatcaaatataagnnnnnnnntgctgcaattattcttcacagtggctttctctgttgttcctttaacactt |
200 |
Q |
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| T |
13590347 |
atgataaagaattgaattttgtttctacacatcaaatataag-aaaaaaatgctgcaattattcttcacagtggctttctctgttgttcctttaacactt |
13590445 |
T |
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| Q |
201 |
tatattccaccaataagaagcttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13590446 |
tatattccaccaataagaagcttg |
13590469 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 9190723 - 9190671
Alignment:
| Q |
172 |
tggctttctctgttgttcctttaacactttatattccaccaataagaagcttg |
224 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||| ||||||||| |
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| T |
9190723 |
tggctttctctgctgttcctttaattctctatattccaccaatcagaagcttg |
9190671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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