View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_low_2 (Length: 483)
Name: NF19184_low_2
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 207 - 467
Target Start/End: Original strand, 34860600 - 34860860
Alignment:
| Q |
207 |
tcaacttacacatataagcttcatcatgtatttccctgcaccctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaaacaagtgc |
306 |
Q |
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| T |
34860600 |
tcaacttacacatataagcttcatcatgtatttccctgcaggctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaaacaagtgc |
34860699 |
T |
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| Q |
307 |
acaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaaagatccaaatcatatatcaaaataaaaacaaaattat |
406 |
Q |
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| T |
34860700 |
acaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaaagatccaaatcatatatcaaaataaaaacaaaattat |
34860799 |
T |
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| Q |
407 |
tagaattttttagtcaaacaagtgagcaacaattttcatatgctaatatataggttcatat |
467 |
Q |
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| T |
34860800 |
tagaattttttagtcaaacaagtgagcaacaattttcataagctaatatataggttcatat |
34860860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 34860418 - 34860584
Alignment:
| Q |
17 |
ctaatatctttagaataggcgactcttacatgccacaatattcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaataccac |
116 |
Q |
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| T |
34860418 |
ctaatatctttagaataggtgactcttacatgccacaatattcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaataccac |
34860517 |
T |
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| Q |
117 |
tctttgaagtctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
183 |
Q |
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| T |
34860518 |
tctttgaagtctgctttttcagagaagtggtaaaaagatttgttgtatttgagtagggagatcaatt |
34860584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 383
Target Start/End: Original strand, 19745640 - 19745778
Alignment:
| Q |
246 |
accctaaatctataatccactttcaaa-caaaaatattatcatttttgagtcaaacaagtgcacaacaatttgaataagctaaaatataagttcacatgt |
344 |
Q |
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| T |
19745640 |
accctaaatctatcatcctcttttaaaactacaacattatcatttatgaatcaaacaagtaaacaaccatttgcataagacgatatataagttaatatat |
19745739 |
T |
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| Q |
345 |
catatatgaacttcaacataactaaagatccaaatcata |
383 |
Q |
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| T |
19745740 |
catatataaacttcaacataactaaatatccaaatcata |
19745778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 377
Target Start/End: Original strand, 34860788 - 34860895
Alignment:
| Q |
270 |
aaacaaaaatattatcatttttgagtcaaacaagtgcacaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaa |
369 |
Q |
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|||||||| ||||| |||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||| ||||| |||||||| | ||||| |
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| T |
34860788 |
aaacaaaattattagaattttttagtcaaacaagtgagcaacaattttcataagctaatatataggttcatatgtcgtatatcaacttcaaaactactaa |
34860887 |
T |
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| Q |
370 |
agatccaa |
377 |
Q |
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| T |
34860888 |
agatccaa |
34860895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 2242594 - 2242506
Alignment:
| Q |
97 |
agaaaaattccaaataccactctttgaagt--ctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
183 |
Q |
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|||||| || || ||||||||||||||| | ||||||| | ||||||||||| |||||||| ||||||||| |||| ||||||||||| |
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| T |
2242594 |
agaaaacttgcacataccactctttgaattatctgctttgttagagaagtggtcaaaagattagttgtatttgagtaaggagatcaatt |
2242506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 2242318 - 2242244
Alignment:
| Q |
224 |
gcttcatcatgtatttccctgcaccctaaatctataatccactttcaaacaaaaatattatcatttttgagtcaa |
298 |
Q |
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| T |
2242318 |
gcttcatcatgtatttgtatccatcctaaatctatgatcctcttcaaaacaaaaatattagaatttttgagtcaa |
2242244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 24023112 - 24023073
Alignment:
| Q |
344 |
tcatatatgaacttcaacataactaaagatccaaatcata |
383 |
Q |
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| T |
24023112 |
tcatatatgaacttcaacataaataaagatccaagtcata |
24023073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 5757387 - 5757427
Alignment:
| Q |
138 |
gagaagtggtaaaa-agatttgttgtatttaagtagggaga |
177 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||| |
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| T |
5757387 |
gagaagtggtaaaaaagatttgttgtatttgagtagggaga |
5757427 |
T |
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