View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_low_4 (Length: 436)
Name: NF19184_low_4
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 54819728 - 54820111
Alignment:
| Q |
19 |
caatttagccttgacaaaattaaaacttaaagtattctttgacannnnnnnactgcgcacgaaacaaattagtctctctcagtctctcataatgaatcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||| |||||| || |||||||||||||||||||||||||||||||||| |||| |
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| T |
54819728 |
caatttagccttgacaaaattaaaacttaaagtattttctgacatttttgcactgcggacaaaacaaattagtctctctcagtctctcataatgagtcaa |
54819827 |
T |
|
| Q |
119 |
agactaattgtctctgatataaaaaatgtaatgaacaacttttgattttattttcgtcaaagactaaattgagccacgaaaaaattgcaagtgatcaaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
54819828 |
agactaattgtctctgatataaaaaatgtaatgaacaacttttgattttattttcgtcaaagattaaattgagccacgaaaaaattgcgagtgatcaaat |
54819927 |
T |
|
| Q |
219 |
tgggcgttcact--ctatataaatagagtgaagatcgtttgtggtgcttg-nnnnnnnntgtgaagct-aatttaatccttaaataataacaatttttag |
314 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
54819928 |
tgggcgttcactcgctatataaatagagtgaagatcatttgtggtgcttgaaaaaaaaatgtgaagctcaatttaatccttaaataa-aacaatttttag |
54820026 |
T |
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| Q |
315 |
tcatgtaaaaaataaattttaacaacttagtctttagctaaacattctcatatctatgatttagtcaatcatagctagattgtcta |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54820027 |
tcatgtaaaaaataaa-tttaacaacttagtctttagctaaacattttcatatctatgatttagtcaatcatagctagattgtcta |
54820111 |
T |
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