View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19184_low_8 (Length: 334)

Name: NF19184_low_8
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19184_low_8
NF19184_low_8
[»] chr1 (1 HSPs)
chr1 (3-302)||(50748647-50748946)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 302
Target Start/End: Original strand, 50748647 - 50748946
Alignment:
Q  3 atttcactgatgatatccgtatttagatgttgaaataacatatttgttttatgtttagtaacggtggttcaatcttcaatgaaaacaacgaagattgaaa 102  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  50748647 atttcaccgatcatatcggtatttagatgttgaaataacacatttattttatgtttagtaacggtgattcaatcttcaatgaaaacaacgacgattgaaa 50748746  T
Q  103 agtgaaatctaagttaagaccacattatacatggtaaaagaaattatatgatatttttgtataacatttctcgtgaccagttgaaaacatcccattagtg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50748747 agtgaaatctaagttaagaccacattatacatggtaaaagaaattatataatatttttgtataacatttctcgtgaccagttgaaaacatcccattagtg 50748846  T
Q  203 gaaagttataagattgatttgcagttaattgttttaataattgatccttcttacttagaaaagattttattgataatggaagtggtctctaagcttttgc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50748847 gaaagttataagattgatttgcagttaattgttttaataattgatccttcttgcttagaaaagattttattgataatggaagtggtctctaagcttttgc 50748946  T

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