View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19184_low_9 (Length: 311)
Name: NF19184_low_9
Description: NF19184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19184_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 1961858 - 1961604
Alignment:
| Q |
1 |
atactgtaattgtatacattattagtttaatttgattgcacatttaaattatatcaccatgactcttcaaattattaaagaaaattttgtttgtgtgagt |
100 |
Q |
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| T |
1961858 |
atactgtaattgtatacattattagtttagtttgattgcacatttaaattatatcaccatgactcttcaaattattaaagaaaattttgtttgtgtgagt |
1961759 |
T |
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| Q |
101 |
gcagtagatcaccttgtaaatacagtaagtttgggacatacattctactttgaagaagttacagacacctcagttttccctgttctcttggtgagaattt |
200 |
Q |
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| T |
1961758 |
gcagtagatcaccttgtaaatacagtaagtttgggacatacattctactttgaagaagttacagacacctcagttttccctgttctcttggtgagaattt |
1961659 |
T |
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| Q |
201 |
caatttgcatatagcatgaatttcaaaatcgtcgcttccgtaattcatttaaaatta |
257 |
Q |
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| T |
1961658 |
caatttgcatatagcatgaatttc--aatcgtcgctaccgtaattcatttaaaatta |
1961604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 1961582 - 1961541
Alignment:
| Q |
255 |
ttattgcttgatcatattattatgagataatgtggtcttttt |
296 |
Q |
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| T |
1961582 |
ttattgcttgatcatattattatgagataatgtggtcttttt |
1961541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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