View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19185_high_10 (Length: 378)

Name: NF19185_high_10
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19185_high_10
NF19185_high_10
[»] scaffold0005 (2 HSPs)
scaffold0005 (4-319)||(44124-44439)
scaffold0005 (319-353)||(44487-44521)
[»] chr8 (26 HSPs)
chr8 (8-319)||(45216744-45217055)
chr8 (8-319)||(34900893-34901204)
chr8 (8-319)||(4246212-4246523)
chr8 (8-319)||(28876089-28876400)
chr8 (11-319)||(43771220-43771527)
chr8 (8-319)||(5539705-5540016)
chr8 (8-316)||(36483718-36484019)
chr8 (8-316)||(12580059-12580358)
chr8 (8-316)||(37668863-37669164)
chr8 (8-200)||(2872509-2872701)
chr8 (227-319)||(32638678-32638770)
chr8 (241-316)||(32877740-32877815)
chr8 (319-353)||(4246130-4246164)
chr8 (319-353)||(34901252-34901286)
chr8 (319-353)||(45217103-45217137)
chr8 (230-319)||(19947718-19947807)
chr8 (319-352)||(43771575-43771608)
chr8 (319-350)||(12580423-12580454)
chr8 (317-352)||(19947853-19947888)
chr8 (285-319)||(13422497-13422531)
chr8 (319-353)||(16384831-16384865)
chr8 (319-352)||(2872790-2872823)
chr8 (230-319)||(6028776-6028865)
chr8 (321-349)||(6028698-6028726)
chr8 (319-347)||(13422421-13422449)
chr8 (319-347)||(42949279-42949307)
[»] chr6 (9 HSPs)
chr6 (8-319)||(7188302-7188613)
chr6 (8-319)||(1036338-1036649)
chr6 (8-202)||(8357283-8357476)
chr6 (230-319)||(31740558-31740647)
chr6 (11-63)||(22989152-22989204)
chr6 (11-63)||(23799192-23799244)
chr6 (319-353)||(1036697-1036731)
chr6 (319-353)||(7188661-7188695)
chr6 (325-353)||(31195747-31195775)
[»] chr4 (19 HSPs)
chr4 (4-319)||(14795292-14795607)
chr4 (8-319)||(8063619-8063930)
chr4 (8-319)||(3403096-3403407)
chr4 (8-315)||(31226627-31226934)
chr4 (8-316)||(52572478-52572786)
chr4 (8-319)||(53322625-53322936)
chr4 (8-319)||(41145898-41146201)
chr4 (8-202)||(52122461-52122655)
chr4 (126-319)||(5325343-5325546)
chr4 (73-180)||(54433545-54433652)
chr4 (230-321)||(5835114-5835205)
chr4 (319-353)||(5325594-5325628)
chr4 (319-353)||(8063978-8064012)
chr4 (319-353)||(14795210-14795244)
chr4 (285-319)||(42472376-42472410)
chr4 (319-353)||(3403455-3403489)
chr4 (285-319)||(19738984-19739018)
chr4 (230-319)||(28377182-28377272)
chr4 (319-352)||(52122742-52122775)
[»] chr7 (24 HSPs)
chr7 (8-319)||(39521055-39521366)
chr7 (8-319)||(40095942-40096253)
chr7 (8-308)||(36660762-36661060)
chr7 (8-316)||(11829983-11830284)
chr7 (8-202)||(27397639-27397833)
chr7 (81-202)||(38265099-38265220)
chr7 (73-180)||(25557619-25557726)
chr7 (230-319)||(1042924-1043013)
chr7 (230-319)||(8028982-8029071)
chr7 (230-319)||(19510798-19510887)
chr7 (244-319)||(26773455-26773529)
chr7 (319-353)||(34122480-34122514)
chr7 (319-353)||(40095860-40095894)
chr7 (285-319)||(42897267-42897301)
chr7 (319-352)||(19510717-19510750)
chr7 (319-352)||(27397925-27397958)
chr7 (319-350)||(39520976-39521007)
chr7 (285-319)||(26843780-26843814)
chr7 (319-353)||(26843862-26843896)
chr7 (285-319)||(34238439-34238473)
chr7 (319-348)||(26773577-26773606)
chr7 (325-353)||(16850996-16851024)
chr7 (325-353)||(27555243-27555271)
chr7 (325-353)||(48163621-48163649)
[»] chr5 (21 HSPs)
chr5 (8-319)||(12852395-12852706)
chr5 (8-319)||(30918637-30918948)
chr5 (8-319)||(26794515-26794826)
chr5 (8-319)||(33830046-33830357)
chr5 (8-316)||(9792584-9792892)
chr5 (10-319)||(1639313-1639615)
chr5 (8-202)||(32707423-32707617)
chr5 (244-319)||(10657127-10657202)
chr5 (277-319)||(39690260-39690302)
chr5 (285-319)||(7977524-7977558)
chr5 (319-353)||(12852313-12852347)
chr5 (319-353)||(32625088-32625122)
chr5 (285-319)||(32625170-32625204)
chr5 (319-352)||(1639663-1639696)
chr5 (230-319)||(5985820-5985909)
chr5 (319-350)||(39690636-39690667)
chr5 (319-349)||(7977446-7977476)
chr5 (319-349)||(26794874-26794904)
chr5 (319-348)||(30918560-30918589)
chr5 (319-352)||(32707704-32707737)
chr5 (319-352)||(41392586-41392619)
[»] chr3 (25 HSPs)
chr3 (8-319)||(52505345-52505656)
chr3 (12-319)||(42464459-42464766)
chr3 (8-319)||(10224673-10224984)
chr3 (8-319)||(48123110-48123420)
chr3 (8-319)||(28705022-28705333)
chr3 (8-319)||(1679203-1679531)
chr3 (12-202)||(45532588-45532778)
chr3 (8-212)||(25936600-25936804)
chr3 (243-315)||(25936817-25936889)
chr3 (230-312)||(28882422-28882504)
chr3 (73-157)||(50523019-50523104)
chr3 (230-302)||(52121465-52121537)
chr3 (319-353)||(28704940-28704974)
chr3 (319-353)||(53192692-53192726)
chr3 (285-319)||(53192774-53192808)
chr3 (319-352)||(1679579-1679612)
chr3 (319-352)||(28882559-28882592)
chr3 (319-352)||(48123028-48123061)
chr3 (230-319)||(50287089-50287178)
chr3 (319-352)||(52505704-52505737)
chr3 (319-349)||(10225032-10225062)
chr3 (319-352)||(45532865-45532898)
chr3 (325-353)||(1528706-1528734)
chr3 (325-353)||(7327918-7327946)
chr3 (325-353)||(37996687-37996715)
[»] chr1 (27 HSPs)
chr1 (8-319)||(6916386-6916697)
chr1 (8-319)||(38330722-38331033)
chr1 (11-319)||(52895228-52895536)
chr1 (8-319)||(8132455-8132766)
chr1 (11-319)||(3427145-3427452)
chr1 (8-319)||(28658830-28659141)
chr1 (8-319)||(5984469-5984771)
chr1 (8-319)||(30324002-30324305)
chr1 (8-317)||(25256900-25257202)
chr1 (8-202)||(1043564-1043758)
chr1 (230-319)||(13012732-13012821)
chr1 (277-319)||(28948738-28948780)
chr1 (319-353)||(6916745-6916779)
chr1 (319-353)||(8132373-8132407)
chr1 (319-353)||(52895584-52895618)
chr1 (230-319)||(14334444-14334533)
chr1 (319-352)||(30323921-30323954)
chr1 (230-319)||(31653158-31653247)
chr1 (319-352)||(31653293-31653326)
chr1 (319-352)||(38330641-38330674)
chr1 (319-352)||(43189849-43189882)
chr1 (319-350)||(3427066-3427097)
chr1 (317-352)||(5984388-5984423)
chr1 (322-352)||(13012872-13012902)
chr1 (319-353)||(20409437-20409471)
chr1 (319-349)||(28949114-28949144)
chr1 (319-352)||(1043444-1043477)
[»] chr2 (20 HSPs)
chr2 (8-319)||(22484551-22484863)
chr2 (11-319)||(6124472-6124779)
chr2 (8-319)||(40308360-40308670)
chr2 (3-316)||(4170039-4170345)
chr2 (8-316)||(6497194-6497495)
chr2 (8-202)||(38601912-38602106)
chr2 (79-202)||(33325155-33325278)
chr2 (230-319)||(18301268-18301357)
chr2 (285-319)||(7877000-7877034)
chr2 (285-319)||(16562095-16562129)
chr2 (319-352)||(4170391-4170424)
chr2 (230-319)||(5371248-5371337)
chr2 (319-350)||(6124393-6124424)
chr2 (322-353)||(16562013-16562044)
chr2 (319-350)||(22571157-22571188)
chr2 (230-312)||(12819495-12819577)
chr2 (319-353)||(22484469-22484503)
chr2 (319-352)||(33325035-33325068)
chr2 (319-352)||(38602193-38602226)
chr2 (325-353)||(7807253-7807281)
[»] scaffold0060 (1 HSPs)
scaffold0060 (8-319)||(29959-30270)
[»] scaffold0037 (2 HSPs)
scaffold0037 (8-319)||(27308-27612)
scaffold0037 (319-352)||(27665-27698)
[»] scaffold0112 (1 HSPs)
scaffold0112 (8-317)||(41606-41908)
[»] scaffold0640 (2 HSPs)
scaffold0640 (12-202)||(7683-7873)
scaffold0640 (319-352)||(7960-7993)
[»] scaffold0177 (2 HSPs)
scaffold0177 (8-202)||(25141-25336)
scaffold0177 (319-352)||(25421-25454)
[»] scaffold0406 (1 HSPs)
scaffold0406 (320-352)||(14055-14087)


Alignment Details
Target: scaffold0005 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 44124 - 44439
Alignment:
Q  4 aatatcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactcttttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44124 aatatcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctacccttttt 44223  T
Q  104 ggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaag 203  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  44224 ggatccattttgtttctttttaaagactggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaag 44323  T
Q  204 caagcttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattgg 303  Q
    |||| || ||||||||||||   ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  44324 caagtttatggatagttcgatggtggccaaagtggacgatgaccactttggaagaaaaagttgaaaccctaatttcttaataagggaaagatgcaattgg 44423  T
Q  304 ttgtgtggtgtggtgt 319  Q
    ||||||||||||||||    
T  44424 ttgtgtggtgtggtgt 44439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 44487 - 44521
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  44487 tagtaatataatgtttttattcttattttttacac 44521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 45216744 - 45217055
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||    
T  45216744 tcccacattcttgattgtcctttcttatatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttgaat 45216843  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  45216844 ccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 45216943  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  45216944 cttttggatggttcgacggtggccaaagtggacggtgaccactttggaagaaaaagttgaaaccctaatttcttagtaagggaaagatgcaattggttgt 45217043  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  45217044 gtggtgtggtgt 45217055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 34900893 - 34901204
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  34900893 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 34900992  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  34900993 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 34901092  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  34901093 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 34901192  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  34901193 gtggtgtggtgt 34901204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 4246523 - 4246212
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  4246523 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 4246424  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  4246423 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 4246324  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||    
T  4246323 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttggaaccctaatttcttagaaagggaaagatgcaattggttgt 4246224  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  4246223 gtggtgtggtgt 4246212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 28876089 - 28876400
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  28876089 tcccacattcttgattgtccttttttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 28876188  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  28876189 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 28876288  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  28876289 cttttggatagttcgacggtggccaaagtggacggccaccactttgaaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 28876388  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  28876389 gtggtgtggtgt 28876400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 43771220 - 43771527
Alignment:
Q  11 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatcca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  43771220 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataa-ccaaattttctaccctttttggatcca 43771318  T
Q  111 ttttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagctt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  43771319 ttttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttacacaagaagctttaaagcaagctt 43771418  T
Q  211 ttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtg 310  Q
    |||||||||| |||  |||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  43771419 ttggatagtttgacggtggccaaagtggacagcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgtgtg 43771518  T
Q  311 gtgtggtgt 319  Q
    |||||||||    
T  43771519 gtgtggtgt 43771527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 5540016 - 5539705
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  5540016 tcccacagtcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 5539917  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||| |||    
T  5539916 ccattttgtttcttttcaaagaatagataaaagagaaagtactcaaatttatctcacaacagaaggaagaacaaggttgcacaagaagctttaaagtaag 5539817  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||  || |||||| | |||||||||||||||||||||||    
T  5539816 cttttggatagttcgacggtggccaaagtggacggtgaccactttggaagaaaaagttgaaactttaatttcttggaaagggaaagatgcaattggttgt 5539717  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  5539716 gtggtgtggtgt 5539705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 36484019 - 36483718
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||||||    
T  36484019 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagttgaagattagtatgcacataaaccaaatcttctaccctttttggat 36483920  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| |       
T  36483919 ccattttgtttattttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaacccta 36483820  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  36483819 attt-------ctcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 36483727  T
Q  308 gtggtgtgg 316  Q
    |||||||||    
T  36483726 gtggtgtgg 36483718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 12580059 - 12580358
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||||| ||||||||||    
T  12580059 tcccacattcttgactgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacaaaaaccaaatcttctaccctttttggat 12580158  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| ||||||   ||     
T  12580159 ccattttgtttcttttcaaagaatggataaaagagaaagtacaccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaacctaa- 12580257  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||| ||||    
T  12580258 -ttt-------ctcgacggtggccaaagtggacagcgaccactttggaagaaaaagttgaaaccctaatttcttagaaaggaaaagatgcaattgtttgt 12580349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 37669164 - 37668863
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||  |||||||||    
T  37669164 tcccacattgttgattgtcctttcttatatccatcttctttccttgacaagagttgaagattagtatgcacataaaccaaatcttctaccttttttggat 37669065  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| |       
T  37669064 ccattttgtttcttttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaacccta 37668965  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||  ||| |||||||||||||| ||||    
T  37668964 attt-------ctcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaaattcttataaagagaaagatgcaattgtttgt 37668872  T
Q  308 gtggtgtgg 316  Q
    |||||||||    
T  37668871 gtggtgtgg 37668863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 2872509 - 2872701
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| |||||| |||||| |||    
T  2872509 tcccacattctcgattgtcctttcttatatccatcttctttccttgacaagattcgaagattagtatgcacataaaccaaatcttctaccctttttcgat 2872608  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaacttta 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||    
T  2872609 ccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagcttta 2872701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 32638678 - 32638770
Alignment:
Q  227 tggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  32638678 tggccaaagtggacggcgaccactttggaagaaaatgttgaaaccctaatttcttagaaagggaaagatgcaattgtttgtgtggtgtggtgt 32638770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 32877815 - 32877740
Alignment:
Q  241 ggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtgg 316  Q
    |||||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || ||||||||||    
T  32877815 ggtgaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttctgtggtgtgg 32877740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 4246164 - 4246130
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  4246164 tagtaatataatgtttttattcttattttttacac 4246130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 34901252 - 34901286
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  34901252 tagtaatataatgtttttattcttattttttacac 34901286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 45217103 - 45217137
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  45217103 tagtaatataatgtttttattcttattttttacac 45217137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 19947718 - 19947807
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| ||||||||| ||| |||  ||||| || ||| ||||| || |||||| ||||||    
T  19947718 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccctaattttttaaaaaggggaatatgaaattgtttctgtggtatggtgt 19947807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 43771575 - 43771608
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  43771575 tagtaatataatgtttttattcttattttttaca 43771608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 12580423 - 12580454
Alignment:
Q  319 tagtaatataatgtttttattcttatttttta 350  Q
    ||||||||||||||||||||||||||||||||    
T  12580423 tagtaatataatgtttttattcttatttttta 12580454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 352
Target Start/End: Original strand, 19947853 - 19947888
Alignment:
Q  317 tgtagtaatataatgtttttattcttattttttaca 352  Q
    |||||||||||||| |||||||||||||||||||||    
T  19947853 tgtagtaatataatatttttattcttattttttaca 19947888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 13422531 - 13422497
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||| ||||||||||||||||    
T  13422531 aagggaaagatgcaattgattgtgtggtgtggtgt 13422497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 16384865 - 16384831
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||| ||||||||||||||||||||||    
T  16384865 tagtaatataatttttttattcttattttttacac 16384831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 2872790 - 2872823
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    |||||||||||| |||||||||||||||||||||    
T  2872790 tagtaatataatatttttattcttattttttaca 2872823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 6028865 - 6028776
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || |||||  |||||||||||||| ||||||||| ||| |||  ||||| |||||| ||||| || | |||| ||||||    
T  6028865 ccaaagtggaaggcgaccatcttggaagaaaaagttgaaaccctaattttttaaaaaggggaagatgaaattgtttctatggtatggtgt 6028776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 6028726 - 6028698
Alignment:
Q  321 gtaatataatgtttttattcttatttttt 349  Q
    |||||||||||||||||||||||||||||    
T  6028726 gtaatataatgtttttattcttatttttt 6028698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 13422449 - 13422421
Alignment:
Q  319 tagtaatataatgtttttattcttatttt 347  Q
    |||||||||||||||||||||||||||||    
T  13422449 tagtaatataatgtttttattcttatttt 13422421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 42949307 - 42949279
Alignment:
Q  319 tagtaatataatgtttttattcttatttt 347  Q
    |||||||||||||||||||||||||||||    
T  42949307 tagtaatataatgtttttattcttatttt 42949279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 7188302 - 7188613
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7188302 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 7188401  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||    
T  7188402 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaatgcaag 7188501  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||| |||||||  ||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  7188502 cttttggattgttcgacggtggccaaagtggttggtgaccactttggaagaaaaagttgaaaccctaatttcttagtaagggaaagatgcaattggttgt 7188601  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  7188602 gtggtgtggtgt 7188613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 1036338 - 1036649
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  1036338 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 1036437  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  1036438 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 1036537  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  1036538 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 1036637  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  1036638 gtggtgtggtgt 1036649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 8357476 - 8357283
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||||||    
T  8357476 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctac-ccttttggat 8357378  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    | ||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  8357377 ctattttatttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 8357283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 31740558 - 31740647
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||||||||||    
T  31740558 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttatgtggtgtggtgt 31740647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 22989152 - 22989204
Alignment:
Q  11 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcg 63  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || |||||    
T  22989152 cacaatcttgattgtcctttcttatatccatcttctttccttgataagagtcg 22989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 23799244 - 23799192
Alignment:
Q  11 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcg 63  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || |||||    
T  23799244 cacaatcttgattgtcctttcttatatccatcttctttccttgataagagtcg 23799192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 1036697 - 1036731
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  1036697 tagtaatataatgtttttattcttattttttacac 1036731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 7188661 - 7188695
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  7188661 tagtaatataatgtttttattcttattttttacac 7188695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 31195747 - 31195775
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  31195747 tataatgtttttattcttattttttacac 31195775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 14795607 - 14795292
Alignment:
Q  4 aatatcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactcttttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14795607 aatatcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctacccttttt 14795508  T
Q  104 ggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaag 203  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  14795507 ggatccattttgtttctttttaaagactggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaag 14795408  T
Q  204 caagcttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattgg 303  Q
    |||| || ||||||||||||   ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  14795407 caagtttatggatagttcgatggtggccaaagtggacgatgaccactttggaagaaaaagttgaaaccctaatttcttaataagggaaagatgcaattgg 14795308  T
Q  304 ttgtgtggtgtggtgt 319  Q
    ||||||||||||||||    
T  14795307 ttgtgtggtgtggtgt 14795292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 8063619 - 8063930
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8063619 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 8063718  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  8063719 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 8063818  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  8063819 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 8063918  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  8063919 gtggtgtggtgt 8063930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 3403096 - 3403407
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  3403096 tcccacattcttgattgtcctttcttatatccaccttctttccttgactatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 3403195  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  3403196 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaaaaacaaggttgcacaggaagctttaaagcaag 3403295  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  3403296 cttttggatagttcgacggtggccaaagtggacggcaaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 3403395  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  3403396 gtggtgtggtgt 3403407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 31226934 - 31226627
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  31226934 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 31226835  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  31226834 ccattttgtttcttttcaaagaattgataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 31226735  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  || ||||||||||||| |||||||||| |||||||||| |||| |||| ||||| || |||||||||||||||||||||||    
T  31226734 cttttggatagttcgacggtgcccaaagtggacggcgaccactttgaaagaaaaagttgaaaacctaatttctcagaaagggaaagatgcaattggttgt 31226635  T
Q  308 gtggtgtg 315  Q
    ||||||||    
T  31226634 gtggtgtg 31226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 52572786 - 52572478
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||  ||||||||||    
T  52572786 tcccacattcttgattttcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctatcctttttggat 52572687  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  52572686 ccattttgtttcttttcaaagaatggataaaagagaaagttctctaatttctcttacatcaggaggaagaacaaggttgcacaagaagctttaaagcaag 52572587  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  52572586 cttttggatagttcgacagtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 52572487  T
Q  308 gtggtgtgg 316  Q
    |||||||||    
T  52572486 gtggtgtgg 52572478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 53322936 - 53322625
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||  ||||||||||    
T  53322936 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaaaagtcgaagattaggatgcacataaaccaaatcttctatcctttttggat 53322837  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53322836 ccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacagcaggaggaagaacaaggttgcacaagaagctttaaagcaag 53322737  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||| | ||  |||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||| ||||    
T  53322736 cttttggatagtacaacagtggccaaactggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaaaatgcaattgtttgt 53322637  T
Q  308 gtggtgtggtgt 319  Q
    |||  |||||||    
T  53322636 gtgtcgtggtgt 53322625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 41146201 - 41145898
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||| ||||    
T  41146201 tcccacattcttgattgtcctttcttatatccatcgtctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttt-ggat 41146103  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||  ||||||||||| |||||||||||||||||||| |       
T  41146102 ccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacataaggaagaacaatgttgcacaagaaactttaaacccta 41146003  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||   |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  41146002 attt-------ctcgacggtggccaaagtggacgacaaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 41145910  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  41145909 gtggtgtggtgt 41145898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 52122461 - 52122655
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  52122461 tcccacattctcgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 52122560  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  52122561 ccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 52122655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 126 - 319
Target Start/End: Original strand, 5325343 - 5325546
Alignment:
Q  126 aagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagcttttggata-------- 217  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||             
T  5325343 aagaatggataaaagagaaagtactcaaatttctctcacaacatgaggaagaacaatgttgcacaagaagctttaaagcaagcttttggatgcttttgga 5325442  T
Q  218 --gttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtg 315  Q
      |||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5325443 tggttcgacggtggccaaagtggacgatgaccactttggaagaaaaagttgaaaccctaatttcttagtaagggaaagatgcaattggttgtgtggtgtg 5325542  T
Q  316 gtgt 319  Q
    ||||    
T  5325543 gtgt 5325546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 54433652 - 54433545
Alignment:
Q  73 atgcacataaaccaaattttctactctttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggag 172  Q
    |||| ||||||||| || ||| || ||||||||||||||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| | || ||     
T  54433652 atgcgcataaaccacatcttcaaccctttttggatccattttatttcttttcaaagaataaataaaagagtaagtactccaatttttctcagaacatgat 54433553  T
Q  173 gaagaaca 180  Q
    ||||||||    
T  54433552 gaagaaca 54433545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 321
Target Start/End: Complemental strand, 5835205 - 5835114
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgtag 321  Q
    |||||||||| || ||||||||||||||||||||| ||||||||| ||| |||  ||||| |||||| ||||| || |||||| || |||||    
T  5835205 ccaaagtggaaggggaccactttggaagaaaaagttgaaaccctaattttttaaaaaggggaagatgaaattgtttctgtggtatgatgtag 5835114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 5325594 - 5325628
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  5325594 tagtaatataatgtttttattcttattttttacac 5325628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 8063978 - 8064012
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  8063978 tagtaatataatgtttttattcttattttttacac 8064012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 14795244 - 14795210
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  14795244 tagtaatataatgtttttattcttattttttacac 14795210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 42472376 - 42472410
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  42472376 aagggaaagatgcaattggttgtgtggtgtggtgt 42472410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 3403455 - 3403489
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  3403455 tagtaatataatgtttttactcttattttttacac 3403489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 19739018 - 19738984
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||| ||||||||||||||||||||||||||    
T  19739018 aagggaaatatgcaattggttgtgtggtgtggtgt 19738984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 28377272 - 28377182
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccct-agtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| |||| ||| | ||| |||| ||||| |||||| ||||| || |||||| ||||||    
T  28377272 ccaaagtggaaggcgaccattttggaagaaaaagttgaaatcctaatttttttagaaaggggaagatgaaattgtttatgtggtatggtgt 28377182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 52122742 - 52122775
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  52122742 tagtaatataatgtttttattctgattttttaca 52122775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 39521366 - 39521055
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  39521366 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 39521267  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    | |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  39521266 ctattttgtttcttttcaaagaatagataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaatctttaaagcaag 39521167  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  39521166 cttttggatagttcgacgatggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 39521067  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  39521066 gtggtgtggtgt 39521055  T

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Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 40096253 - 40095942
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  40096253 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 40096154  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  40096153 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 40096054  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  40096053 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 40095954  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  40095953 gtggtgtggtgt 40095942  T

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Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 36661060 - 36660762
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| |||||||| ||||||||| ||||||  |||||||||    
T  36661060 tcccacattcttgattgtcctttcttatattcat--tctttccttgacaagagtcgaagattagtatgcacacaaaccaaatcttctaccatttttggat 36660963  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  36660962 ccattttctttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaataggaggaagaacaaggttgcacaagaagctttaaagcaag 36660863  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||||||| |||  |||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  36660862 cttttggatagtttgacggtggctaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 36660763  T

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Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 11830284 - 11829983
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||||| ||||||||||    
T  11830284 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcatataaaccaaatcttctaccctttttggat 11830185  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| |       
T  11830184 ccattttgtttcttttcaaagaatggataaatgagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaacccta 11830085  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  11830084 attt-------ctcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 11829992  T
Q  308 gtggtgtgg 316  Q
    |||||||||    
T  11829991 gtggtgtgg 11829983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 27397639 - 27397833
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  27397639 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 27397738  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  27397739 ccattttgtttcttttctaagaatggataaaagagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 27397833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 38265220 - 38265099
Alignment:
Q  81 aaaccaaattttctactctttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaaca 180  Q
    ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || |||||||||||    
T  38265220 aaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaaca 38265121  T
Q  181 aggttgcacaagaaactttaaa 202  Q
    |||||||||||||| |||||||    
T  38265120 aggttgcacaagaagctttaaa 38265099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 25557726 - 25557619
Alignment:
Q  73 atgcacataaaccaaattttctactctttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggag 172  Q
    |||| |||||||||||| |||  | ||||||||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||||||||| | || ||     
T  25557726 atgcgcataaaccaaatcttcagccctttttggatccattttatttcttttcaaagaatgaataaaagagtaagtactccaatttctctcagaacatgat 25557627  T
Q  173 gaagaaca 180  Q
    ||||||||    
T  25557626 gaagaaca 25557619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 1042924 - 1043013
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || || || ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||| ||||||    
T  1042924 ccaaagtggaaggcgatcattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttatgtggtatggtgt 1043013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 8029071 - 8028982
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || ||| || ||||||    
T  8029071 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttctgtcgtatggtgt 8028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 19510887 - 19510798
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| ||  |||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||| ||||||    
T  19510887 ccaaagtggaaggcaaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttctgtggtatggtgt 19510798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 26773455 - 26773529
Alignment:
Q  244 gaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||||||||||    
T  26773455 gaccattttggaagaaaaagttgaaaccctaattt-ttagaaaggggaagatgaaattgtttctgtggtgtggtgt 26773529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 34122480 - 34122514
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  34122480 tagtaatataatgtttttattcttattttttacac 34122514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 40095894 - 40095860
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  40095894 tagtaatataatgtttttattcttattttttacac 40095860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 42897301 - 42897267
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  42897301 aagggaaagatgcaattggttgtgtggtgtggtgt 42897267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 19510750 - 19510717
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  19510750 tagtaatataatgtttttattcttattttttaca 19510717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 27397925 - 27397958
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  27397925 tagtaatataatgtttttattcttattttttaca 27397958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Complemental strand, 39521007 - 39520976
Alignment:
Q  319 tagtaatataatgtttttattcttatttttta 350  Q
    ||||||||||||||||||||||||||||||||    
T  39521007 tagtaatataatgtttttattcttatttttta 39520976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 26843780 - 26843814
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||| ||||||||||||||||    
T  26843780 aagggaaagatgcaattgattgtgtggtgtggtgt 26843814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 26843862 - 26843896
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||| ||||||||||||||||||||||    
T  26843862 tagtaatataatatttttattcttattttttacac 26843896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 34238473 - 34238439
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||| ||||||||||||    
T  34238473 aagggaaagatgcaattggttgcgtggtgtggtgt 34238439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 26773577 - 26773606
Alignment:
Q  319 tagtaatataatgtttttattcttattttt 348  Q
    ||||||||||||||||||||||||||||||    
T  26773577 tagtaatataatgtttttattcttattttt 26773606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 16851024 - 16850996
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  16851024 tataatgtttttattcttattttttacac 16850996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 27555243 - 27555271
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  27555243 tataatgtttttattcttattttttacac 27555271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 48163649 - 48163621
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  48163649 tataatgtttttattcttattttttacac 48163621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 12852706 - 12852395
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  12852706 tcccacattcttgattgtcttttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 12852607  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  12852606 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 12852507  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  12852506 cttttggatagtttgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 12852407  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  12852406 gtggtgtggtgt 12852395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 30918948 - 30918637
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  30918948 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 30918849  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||     
T  30918848 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaaa 30918749  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||    
T  30918748 cttttggatagttcgacggtggccaaagtggacggcgaccacttaggaagaaaaagttgaaaccctaatttcttagaaagggaaagatccaattggttgt 30918649  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  30918648 gtggtgtggtgt 30918637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 26794515 - 26794826
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  26794515 tcccacattcttgattgtcctttcatatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 26794614  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  26794615 ccattttatttcttttcaaagaatggataaaagagaaagtgctcaaatttctcttacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 26794714  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  26794715 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 26794814  T
Q  308 gtggtgtggtgt 319  Q
    ||||| ||||||    
T  26794815 gtggtttggtgt 26794826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 33830357 - 33830046
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||| ||||||||||    
T  33830357 tcccacattcttgatagtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaagcttttaccctttttggat 33830258  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||    
T  33830257 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaagaaggttgcacaagaagctttaaagctag 33830158  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  33830157 cttttcgatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 33830058  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  33830057 gtggtgtggtgt 33830046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 9792892 - 9792584
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9792892 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 9792793  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||    
T  9792792 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgtacaggaagctttaaagcaag 9792693  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||||| | |||    
T  9792692 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttggaaccctaatttcttagaaagggaaagatgcaattagctgt 9792593  T
Q  308 gtggtgtgg 316  Q
    |||||||||    
T  9792592 gtggtgtgg 9792584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 1639313 - 1639615
Alignment:
Q  10 ccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatcc 109  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||| || ||||||||||||||| |||||| ||||||||||||    
T  1639313 ccacattctagattgtcctttcttatatccatattctttccttcacaagagtcgaagattagtacgcacataaaccaaatcttctaccctttttggatcc 1639412  T
Q  110 attttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagct 209  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| ||        
T  1639413 attttgtttcttttcaaagaatggataaaatagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa-cactaa 1639511  T
Q  210 tttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgt 309  Q
    |||       | |||  |||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||||| ||||||    
T  1639512 ttt------cttgacggtggccaaagtggacggcgaccactttggaagaaaaaattgaaaccctaatttcttagaaagggaaagatgcaattgtttgtgt 1639605  T
Q  310 ggtgtggtgt 319  Q
    ||||||||||    
T  1639606 ggtgtggtgt 1639615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 32707423 - 32707617
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  32707423 tcccacattctcgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 32707522  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  32707523 ccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 32707617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 10657202 - 10657127
Alignment:
Q  244 gaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||||||||||    
T  10657202 gaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttctgtggtgtggtgt 10657127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 39690260 - 39690302
Alignment:
Q  277 ttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  39690260 ttcttagaaagggaaagatgcaattggttgtgtggtgtggtgt 39690302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 7977558 - 7977524
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  7977558 aagggaaagatgcaattggttgtgtggtgtggtgt 7977524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 12852347 - 12852313
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  12852347 tagtaatataatgtttttattcttattttttacac 12852313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 32625122 - 32625088
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  32625122 tagtaatataatgtttttattcttattttttacac 32625088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 32625204 - 32625170
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  32625204 aagggaaagatgcaattggttgtgtggtgtggtgt 32625170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 1639663 - 1639696
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  1639663 tagtaatataatgtttttattcttattttttaca 1639696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 5985820 - 5985909
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| ||||||| | ||| | || ||||| |||||| ||||| || |||||| ||||||    
T  5985820 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccccaatttttaagaaaggggaagatgaaattgtttatgtggtatggtgt 5985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 39690636 - 39690667
Alignment:
Q  319 tagtaatataatgtttttattcttatttttta 350  Q
    ||||||||||||||||||||||||||||||||    
T  39690636 tagtaatataatgtttttattcttatttttta 39690667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 7977476 - 7977446
Alignment:
Q  319 tagtaatataatgtttttattcttatttttt 349  Q
    |||||||||||||||||||||||||||||||    
T  7977476 tagtaatataatgtttttattcttatttttt 7977446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Original strand, 26794874 - 26794904
Alignment:
Q  319 tagtaatataatgtttttattcttatttttt 349  Q
    |||||||||||||||||||||||||||||||    
T  26794874 tagtaatataatgtttttattcttatttttt 26794904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 30918589 - 30918560
Alignment:
Q  319 tagtaatataatgtttttattcttattttt 348  Q
    ||||||||||||||||||||||||||||||    
T  30918589 tagtaatataatgtttttattcttattttt 30918560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 32707704 - 32707737
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  32707704 tagtaatataatgtttttattctgattttttaca 32707737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 41392586 - 41392619
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    |||||||||||| |||||||||||||||||||||    
T  41392586 tagtaatataatatttttattcttattttttaca 41392619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 52505345 - 52505656
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  52505345 tcccacattcttgattgtcctttcttatatccatcttatttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 52505444  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  52505445 ccattttgtttctttttcaagtatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaatgttgcacaagaagctttaaagcaag 52505544  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  52505545 cttttggatggttcgacggtggccaaagtggacggtgaccactttggaagaaaaagttgaaaccctaatttcttagtaagggaaagatgcaattggttgt 52505644  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  52505645 gtggtgtggtgt 52505656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 42464459 - 42464766
Alignment:
Q  12 acattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatccat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  42464459 acattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggatccat 42464558  T
Q  112 tttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagcttt 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  42464559 tttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaaacttt 42464658  T
Q  212 tggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtgg 311  Q
    |||||||||||||  |||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||    
T  42464659 tggatagttcgacggtggccaaagtggacggcgaccacttaggaagaaaaagttgaaaccctaatttcttagaaagggaaagatccaattggttgtgtgg 42464758  T
Q  312 tgtggtgt 319  Q
    ||||||||    
T  42464759 tgtggtgt 42464766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 10224673 - 10224984
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  10224673 tcccacattcttgattgtcctttcatatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 10224772  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  10224773 ccattttatttcttttcaaagaatggataaaagagaaagtgctcaaatttctcttacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 10224872  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  10224873 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 10224972  T
Q  308 gtggtgtggtgt 319  Q
    ||||| ||||||    
T  10224973 gtggtttggtgt 10224984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 48123420 - 48123110
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactcttttt-gga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |||    
T  48123420 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttctacccttttttgga 48123321  T
Q  107 tccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaa 206  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  48123320 tccattttgttt--tttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggatgaagaacaaggttgcacaagaagctttaaagcaa 48123223  T
Q  207 gcttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttg 306  Q
    |||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  48123222 gcttttagatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttg 48123123  T
Q  307 tgtggtgtggtgt 319  Q
    |||||| ||||||    
T  48123122 tgtggtatggtgt 48123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 28705333 - 28705022
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  |||||  |||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  28705333 tcccacattcttgattgtcctttcttatatccacattcttaacttgacaaaagtcgaagattaatatgcacataaacaaaatcttctaccctttttggat 28705234  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  28705233 ccattttgtttcttttaaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 28705134  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||    
T  28705133 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaaaggaaagatgcaattggttgt 28705034  T
Q  308 gtggtgtggtgt 319  Q
    ||| ||||||||    
T  28705033 gtgatgtggtgt 28705022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 1679203 - 1679531
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  1679203 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 1679302  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaa---------------- 191  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||                    
T  1679303 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaaaaaggttgcacaaagaacaaggttgcact 1679402  T
Q  192 -gaaactttaaagcaagcttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaaggga 290  Q
     ||| ||||||||||| |||||||||||||||||  |||||||||||||||| || |||||||||||||||||| | ||||||| |||||||| ||||||    
T  1679403 ggaagctttaaagcaaacttttggatagttcgacggtggccaaagtggacggcgatcactttggaagaaaaagttggaaccctaatttcttagaaaggga 1679502  T
Q  291 aagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||| ||||||||||||    
T  1679503 aagatgcaattggttgggtggtgtggtgt 1679531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 45532588 - 45532778
Alignment:
Q  12 acattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatccat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  45532588 acattcttgattgtcctttcttatatccatcttctttccttgacaagagtcaaagattagtatgcacataaaccaaatcttctaccctttttggatccat 45532687  T
Q  112 tttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    |||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  45532688 tttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 45532778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 25936600 - 25936804
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||| |||||||||||    
T  25936600 tcccacattcttgattgttctttcttatattcatcttctttccttgacaagagtcgaagattagtatccacataaaccaaatcttctattctttttggat 25936699  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||| || |||| ||||    
T  25936700 ccattttgtttcttttcaaagaatggataaaagagaaagtaccctaatttctctcacaaccggaggaagaacaaggttgcacaagaagctgtaaaacaag 25936799  T
Q  208 ctttt 212  Q
    |||||    
T  25936800 ctttt 25936804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 25936817 - 25936889
Alignment:
Q  243 tgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtg 315  Q
    ||||||||||| || ||||||| ||||||||| |||||||| |||||||||||||||||| || |||||||||    
T  25936817 tgaccactttgaaataaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttatgtggtgtg 25936889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 28882422 - 28882504
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggt 312  Q
    |||||||||| || ||||||||||||||||||||| ||||||||| ||| |||  ||||| |||||| ||||| || ||||||    
T  28882422 ccaaagtggaaggcgaccactttggaagaaaaagttgaaaccctaattttttaaaaaggggaagatgaaattgtttttgtggt 28882504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 50523019 - 50523104
Alignment:
Q  73 atgcacataaaccaaattttctactc-tttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaattt 157  Q
    |||| |||||||||||| ||| || | |||||||||||||||| |||||||| ||| |||| ||||||||| |||||||| |||||    
T  50523019 atgcgcataaaccaaatcttcaacccctttttggatccattttatttcttttgaaataatgaataaaagagtaagtactccaattt 50523104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 52121537 - 52121465
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattg 302  Q
    |||||||||| || ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| |||||    
T  52121537 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattg 52121465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 28704974 - 28704940
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  28704974 tagtaatataatgtttttattcttattttttacac 28704940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 53192726 - 53192692
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  53192726 tagtaatataatgtttttattcttattttttacac 53192692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 53192808 - 53192774
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  53192808 aagggaaagatgcaattggttgtgtggtgtggtgt 53192774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 1679579 - 1679612
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  1679579 tagtaatataatgtttttattcttattttttaca 1679612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 28882559 - 28882592
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  28882559 tagtaatataatgtttttattcttattttttaca 28882592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 48123061 - 48123028
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  48123061 tagtaatataatgtttttattcttattttttaca 48123028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 50287089 - 50287178
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||  || ||||| ||||||||||||||| ||||| ||| ||| |||  |||||||||||| ||||| || |||||| ||||||    
T  50287089 ccaaagtggcaggcgaccattttggaagaaaaagttgaaactctaattttttaaaaagggaaagatgaaattgtttttgtggtatggtgt 50287178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 52505704 - 52505737
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  52505704 tagtaatataatgtttttattcttattttttaca 52505737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Original strand, 10225032 - 10225062
Alignment:
Q  319 tagtaatataatgtttttattcttatttttt 349  Q
    |||||||||||||||||||||||||||||||    
T  10225032 tagtaatataatgtttttattcttatttttt 10225062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 45532865 - 45532898
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    |||||||||||| |||||||||||||||||||||    
T  45532865 tagtaatataatatttttattcttattttttaca 45532898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 1528734 - 1528706
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  1528734 tataatgtttttattcttattttttacac 1528706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 7327946 - 7327918
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  7327946 tataatgtttttattcttattttttacac 7327918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 37996687 - 37996715
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  37996687 tataatgtttttattcttattttttacac 37996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 6916386 - 6916697
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  6916386 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 6916485  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  6916486 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 6916585  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  6916586 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 6916685  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  6916686 gtggtgtggtgt 6916697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 38331033 - 38330722
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  38331033 tcccacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 38330934  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  38330933 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 38330834  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  38330833 cttttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 38330734  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  38330733 gtggtgtggtgt 38330722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 52895228 - 52895536
Alignment:
Q  11 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatcca 110  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  52895228 cacattcttgattgtcctttcttatatccacattctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatcca 52895327  T
Q  111 ttttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagctt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  52895328 ttttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaagctt 52895427  T
Q  211 ttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtg 310  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  52895428 ttggatagttcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgtgtg 52895527  T
Q  311 gtgtggtgt 319  Q
    |||||||||    
T  52895528 gtgtggtgt 52895536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 8132766 - 8132455
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8132766 tcccacattcttgattgtcctttcttatatccacattctttccttgacaacagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 8132667  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  8132666 ccattttatttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttgcacaggaagctttaaagcaag 8132567  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  8132566 cttttggatagttcgacgatggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 8132467  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  8132466 gtggtgtggtgt 8132455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 3427452 - 3427145
Alignment:
Q  11 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatcca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  3427452 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataa-ccaaattttctaccctttttggatcca 3427354  T
Q  111 ttttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagctt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  3427353 ttttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttacacaagaagctttaaagcaagctt 3427254  T
Q  211 ttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtg 310  Q
    |||||||||| |||  |||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  3427253 ttggatagtttgacggtggccaaagtggacagcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgtgtg 3427154  T
Q  311 gtgtggtgt 319  Q
    |||||||||    
T  3427153 gtgtggtgt 3427145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 28658830 - 28659141
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||  ||||||||||    
T  28658830 tcccacattcttgattgtcctttcttatatccatcttctttcattgacaagagtcgaagattagtatgcacataaaccaaatcttctatcctttttggat 28658929  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  28658930 ccattttgtttcttttcaaagaatggataaaagagaaagtactctaatttctctcacaacaggaggaagaacaaggttgcacaagaagctttaaagcaag 28659029  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  ||||||||||||||||   ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  28659030 cttttggatagttcgacggtggccaaagtggacggcacccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 28659129  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  28659130 gtggtgtggtgt 28659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 5984771 - 5984469
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| || ||| |||||| |||    
T  5984771 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttataccctttttagat 5984672  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||||||||| ||||||| |       
T  5984671 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctct--caacatgaggaagaacaaggttgcacaagaagctttaaacccta 5984574  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||  |||| ||||||||||||| ||||    
T  5984573 attt-------ctcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttataaaggaaaagatgcaattgtttgt 5984481  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  5984480 gtggtgtggtgt 5984469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 30324305 - 30324002
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||| |||||||||||||| |||||| ||||||||||    
T  30324305 tcccacattcttgattgtcctttcttatattcatcttctttccttgacaagagtcggagattagtatccacataaaccaaatattctaccctttttggat 30324206  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| |       
T  30324205 ccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaacccta 30324106  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  || ||||||||||||| |||||||||||||| |||||| ||||||||| |||||||  |||||||||||||||||| ||||    
T  30324105 attt-------ctcgacggtgtccaaagtggacggcgaccactttggaag-aaaagttgaaaccctaatttcttataaagggaaagatgcaattgtttgt 30324014  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  30324013 gtggtgtggtgt 30324002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 25257202 - 25256900
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||| |||||| ||||||||||    
T  25257202 tcccacattcctgactgtcctttcttatatccattttctttccttgacaagaatcgaagattagtatgcacataaaccaaatcttctaccctttttggat 25257103  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||| || |||||| |||||||||||||||||||||||||| |       
T  25257102 ccattttatttcttttcaaagaatggataaaagagaaagtactgcaatttctctcacaacatgaggaataacaaggttgcacaagaaactttaaacccta 25257003  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  || ||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||    
T  25257002 attt-------ctcgacggtgaccaaagtggacggcgactactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattgtttgt 25256910  T
Q  308 gtggtgtggt 317  Q
    ||||||||||    
T  25256909 gtggtgtggt 25256900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 1043758 - 1043564
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  1043758 tcccacattctcgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 1043659  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    | |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  1043658 ctattttgtttcttttcaaagaatggataaaagagaaagtatccaaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 1043564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 13012732 - 13012821
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||| ||||||    
T  13012732 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttctgtggtatggtgt 13012821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 28948738 - 28948780
Alignment:
Q  277 ttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  28948738 ttcttagaaagggaaagatgcaattggttgtgtggtgtggtgt 28948780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 6916745 - 6916779
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  6916745 tagtaatataatgtttttattcttattttttacac 6916779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 8132407 - 8132373
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  8132407 tagtaatataatgtttttattcttattttttacac 8132373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 52895584 - 52895618
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  52895584 tagtaatataatgtttttattcttattttttacac 52895618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 14334533 - 14334444
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| ||  |||| ||||||||||||||| ||||||||| ||| |||  ||||| |||||| ||||| || |||||| ||||||    
T  14334533 ccaaagtggaaggcaaccattttggaagaaaaagttgaaaccctaattttttaaaaaggggaagatgaaattgtttctgtggtatggtgt 14334444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 30323954 - 30323921
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  30323954 tagtaatataatgtttttattcttattttttaca 30323921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 31653158 - 31653247
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| |||| |||| ||| |||  ||||| |||||| ||||| || |||||| ||||||    
T  31653158 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaacctaattttttaaaaaggggaagatgaaattgtttctgtggtatggtgt 31653247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 31653293 - 31653326
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  31653293 tagtaatataatgtttttattcttattttttaca 31653326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 38330674 - 38330641
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  38330674 tagtaatataatgtttttattcttattttttaca 38330641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 43189882 - 43189849
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  43189882 tagtaatataatgtttttattcttattttttaca 43189849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Complemental strand, 3427097 - 3427066
Alignment:
Q  319 tagtaatataatgtttttattcttatttttta 350  Q
    ||||||||||||||||||||||||||||||||    
T  3427097 tagtaatataatgtttttattcttatttttta 3427066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 5984423 - 5984388
Alignment:
Q  317 tgtagtaatataatgtttttattcttattttttaca 352  Q
    |||||||||||||| |||||||||||||||||||||    
T  5984423 tgtagtaatataatatttttattcttattttttaca 5984388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 352
Target Start/End: Original strand, 13012872 - 13012902
Alignment:
Q  322 taatataatgtttttattcttattttttaca 352  Q
    |||||||||||||||||||||||||||||||    
T  13012872 taatataatgtttttattcttattttttaca 13012902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 20409437 - 20409471
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    |||||||||||| ||||||||||||||||||||||    
T  20409437 tagtaatataatatttttattcttattttttacac 20409471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Original strand, 28949114 - 28949144
Alignment:
Q  319 tagtaatataatgtttttattcttatttttt 349  Q
    |||||||||||||||||||||||||||||||    
T  28949114 tagtaatataatgtttttattcttatttttt 28949144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 1043477 - 1043444
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  1043477 tagtaatataatgtttttattctgattttttaca 1043444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 22484863 - 22484551
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  22484863 tcccacattcttgattgtcctttcttatatcgatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaatcttctaccccttttggat 22484764  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  22484763 ccattttgtttcttttaaaagaatggataaaagagaaagtactcaaatttcactcacaacaggaggaagaacaaggttgcacaagaaactttaaagcaag 22484664  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaatt-ggttg 306  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |||| |||||    
T  22484663 cttttggatagttcgacggtggccaaagtggacggtgaccactttggaagaaaaagttgaaaccttaatttcttagtaagggaaagatgtaattgggttg 22484564  T
Q  307 tgtggtgtggtgt 319  Q
    |||||||||||||    
T  22484563 tgtggtgtggtgt 22484551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 6124779 - 6124472
Alignment:
Q  11 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatcca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  6124779 cacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataa-ccaaattttctaccctttttggatcca 6124681  T
Q  111 ttttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaagctt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  6124680 ttttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggaggaagaacaaggttacacaagaagctttaaagcaagctt 6124581  T
Q  211 ttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtg 310  Q
    |||||||||| |||  |||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||    
T  6124580 ttggatagtttgacggtggccaaagtggacagcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgtgtg 6124481  T
Q  311 gtgtggtgt 319  Q
    |||||||||    
T  6124480 gtgtggtgt 6124472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 40308360 - 40308670
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||    
T  40308360 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattagtatgcacataaaccaaatcttataccctttttggat 40308459  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  40308460 ccattttgtttcttttcaaagaatggatagaagagaaagtactcaaatttctctcacaagaggaggaagaacaaggttgcacaagaagctttaaagcaag 40308559  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||    
T  40308560 cttttggatagttcgacggtagccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttag-aaaggaaagatgcaattggttgt 40308658  T
Q  308 gtggtgtggtgt 319  Q
    ||| ||||||||    
T  40308659 gtgatgtggtgt 40308670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 4170039 - 4170345
Alignment:
Q  3 gaatatcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttt 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| |||||    
T  4170039 gaatgtcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttt 4170138  T
Q  103 tggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  4170139 tggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 4170238  T
Q  203 gcaagcttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattg 302  Q
     |    |||        ||||   |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  4170239 ccctaattt-------ctcgatggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattg 4170331  T
Q  303 gttgtgtggtgtgg 316  Q
     |||||||||||||    
T  4170332 tttgtgtggtgtgg 4170345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 6497194 - 6497495
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||||||    
T  6497194 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagttgaagattagtatgcacataaaccaaatcttctaccctttttggat 6497293  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||| |       
T  6497294 ccattttgtttattttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaacccta 6497393  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||  ||||    
T  6497394 attt-------ctcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattttttgt 6497486  T
Q  308 gtggtgtgg 316  Q
    |||||||||    
T  6497487 gtggtgtgg 6497495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 38601912 - 38602106
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  38601912 tcccacattctcgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggat 38602011  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  38602012 ccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 38602106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 33325278 - 33325155
Alignment:
Q  79 ataaaccaaattttctactctttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaa 178  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || |||||||||    
T  33325278 ataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaa 33325179  T
Q  179 caaggttgcacaagaaactttaaa 202  Q
    |||||||||||||||| |||||||    
T  33325178 caaggttgcacaagaagctttaaa 33325155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 18301357 - 18301268
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| || ||||| ||||||||||||||| ||||||||| ||| |||| ||||| |||||| ||||| || |||||| ||||||    
T  18301357 ccaaagtggaaggcgaccattttggaagaaaaagttgaaaccctaattttttagaaaggggaagatgaaattgtttctgtggtatggtgt 18301268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 7877034 - 7877000
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  7877034 aagggaaagatgcaattggttgtgtggtgtggtgt 7877000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 16562129 - 16562095
Alignment:
Q  285 aagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||||||||||||||||||||||||||||    
T  16562129 aagggaaagatgcaattggttgtgtggtgtggtgt 16562095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 4170391 - 4170424
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  4170391 tagtaatataatgtttttattcttattttttaca 4170424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 5371337 - 5371248
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggtgtggtgt 319  Q
    |||||||||| ||  |||| ||||||||||||||| ||||||||| ||| |||  ||||| |||||| ||||| || |||||| ||||||    
T  5371337 ccaaagtggaaggcaaccattttggaagaaaaagttgaaaccctaattttttaaaaaggggaagatgaaattgtttatgtggtatggtgt 5371248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Complemental strand, 6124424 - 6124393
Alignment:
Q  319 tagtaatataatgtttttattcttatttttta 350  Q
    ||||||||||||||||||||||||||||||||    
T  6124424 tagtaatataatgtttttattcttatttttta 6124393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 353
Target Start/End: Complemental strand, 16562044 - 16562013
Alignment:
Q  322 taatataatgtttttattcttattttttacac 353  Q
    ||||||||||||||||||||||||||||||||    
T  16562044 taatataatgtttttattcttattttttacac 16562013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Complemental strand, 22571188 - 22571157
Alignment:
Q  319 tagtaatataatgtttttattcttatttttta 350  Q
    ||||||||||||||||||||||||||||||||    
T  22571188 tagtaatataatgtttttattcttatttttta 22571157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 12819577 - 12819495
Alignment:
Q  230 ccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgtgtggt 312  Q
    |||||||||| || ||||| |||||||||||| || ||||||||| ||| |||  ||||| |||||| ||||| || ||||||    
T  12819577 ccaaagtggaaggcgaccattttggaagaaaaggttgaaaccctaattttttaaaaaggggaagatgaaattgtttctgtggt 12819495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 22484503 - 22484469
Alignment:
Q  319 tagtaatataatgtttttattcttattttttacac 353  Q
    ||||||||||||||||||||| |||||||||||||    
T  22484503 tagtaatataatgtttttatttttattttttacac 22484469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 33325068 - 33325035
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  33325068 tagtaatataatgtttttattctgattttttaca 33325035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 38602193 - 38602226
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  38602193 tagtaatataatgtttttattctgattttttaca 38602226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 7807253 - 7807281
Alignment:
Q  325 tataatgtttttattcttattttttacac 353  Q
    |||||||||||||||||||||||||||||    
T  7807253 tataatgtttttattcttattttttacac 7807281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 29959 - 30270
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  29959 tcccacattcttgattgtcctttcttatatccatcttctttccttaacaatagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 30058  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  30059 ccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacaggagaaagaacaaggttgcacaagaagctttaaagcaag 30158  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
    |||||||||||||||||  |||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  30159 cttttggatagttcgacggtggccaaagtggacggcgaccactttgaaagaaaaagttgaaaccctaatttcttagaaagggaaagatgcaattggttgt 30258  T
Q  308 gtggtgtggtgt 319  Q
    ||||||||||||    
T  30259 gtggtgtggtgt 30270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 27308 - 27612
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||    
T  27308 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttggat 27407  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||| ||||||| |       
T  27408 ccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacatgaggaagaacaaggttgcacaggaagctttaaacccta 27507  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  |||||||||||||||| ||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||| ||||    
T  27508 attt-------ctcgacggtggccaaagtggacggcgaccactttggaagaaaaagttgaaaccttaatttcttagaaagggaaagatgcaattgtttgt 27600  T
Q  308 gtggtgtggtgt 319  Q
     |||||||||||    
T  27601 atggtgtggtgt 27612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 27665 - 27698
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  27665 tagtaatataatgtttttattcttattttttaca 27698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 41606 - 41908
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||| |||||| ||||||||||    
T  41606 tcccacattcttgattgtcctttcttatatccatcttctttccttgacaagagtaaaagattagtatgcacataaaccaaatcttctaccctttttggat 41705  T
Q  108 ccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaagcaag 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||  |||||||||||||||| ||||||| ||||||| |       
T  41706 ccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcataacataaggaagaacaaggttgtacaagaagctttaaacccta 41805  T
Q  208 cttttggatagttcgactatggccaaagtggacggtgaccactttggaagaaaaagtcgaaaccctagtttcttagtaagggaaagatgcaattggttgt 307  Q
     |||        |||||  ||  |||||||||||  ||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| ||||    
T  41806 attt-------ctcgacggtgaacaaagtggacgacgaccactttggaagaaaaagttgaaaccctaatttcttagaaagcgaaagatgcaattgtttgt 41898  T
Q  308 gtggtgtggt 317  Q
    ||||||||||    
T  41899 gtggtgtggt 41908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 7683 - 7873
Alignment:
Q  12 acattcttgattgtcctttcttatatccatcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttggatccat 111  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  7683 acattctcgattgtcctttcttatatccatcttctttccttgacaagagtcgaagattaatatgcacataaaccaaatcttctaccctttttggatccat 7782  T
Q  112 tttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    |||||||||||| ||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  7783 tttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatgaggaagaacaaggttgcacaagaagctttaaa 7873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 7960 - 7993
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  7960 tagtaatataatgtttttattctgattttttaca 7993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 25141 - 25336
Alignment:
Q  8 tcccacattcttgattgtcctttcttatatcc-atcttctttccttgacaatagtcgaagattaatatgcacataaaccaaattttctactctttttgga 106  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| |||||||||    
T  25141 tcccacattctctattgtcctttcttatatcccatcttctttccttgacaagagtcgaagattagtatgcacataaaccaaatcttctaccctttttgga 25240  T
Q  107 tccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacagcaggaggaagaacaaggttgcacaagaaactttaaa 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| | || || ||||||||||||| |||||||| |||||||    
T  25241 tccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcaaaacatgatgaagaacaaggtttcacaagaagctttaaa 25336  T

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Target: scaffold0177; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 25421 - 25454
Alignment:
Q  319 tagtaatataatgtttttattcttattttttaca 352  Q
    ||||||||||||||||||||||||||||||||||    
T  25421 tagtaatataatgtttttattcttattttttaca 25454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 14087 - 14055
Alignment:
Q  320 agtaatataatgtttttattcttattttttaca 352  Q
    |||||||||||||||||||||||||||||||||    
T  14087 agtaatataatgtttttattcttattttttaca 14055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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