View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19185_high_11 (Length: 371)

Name: NF19185_high_11
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19185_high_11
NF19185_high_11
[»] chr6 (1 HSPs)
chr6 (182-357)||(24998891-24999065)
[»] chr2 (1 HSPs)
chr2 (136-319)||(38979700-38979883)
[»] chr3 (2 HSPs)
chr3 (136-319)||(51423942-51424126)
chr3 (183-319)||(11685962-11686097)
[»] chr8 (2 HSPs)
chr8 (183-319)||(8211560-8211695)
chr8 (136-319)||(9289755-9289939)
[»] scaffold0442 (1 HSPs)
scaffold0442 (136-319)||(13036-13222)
[»] chr4 (3 HSPs)
chr4 (183-319)||(7055248-7055384)
chr4 (136-319)||(14463069-14463253)
chr4 (136-172)||(7055398-7055434)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 182 - 357
Target Start/End: Original strand, 24998891 - 24999065
Alignment:
Q  182 cccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatata 281  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  24998891 cccttatatgcatttgaactccttaggaacaaattatattaccatcatgaatgtg-cttttttggttaatcctctatgtgcaacagttagagtatatata 24998989  T
Q  282 tgcaagttatgctttgaagagttcttatgttaattttannnnnnnaataatgacagtgttcttttatatccacagg 357  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  24998990 tgcaagttatgctttgaagagttcttatgttaattttatttttttaataatgacagtgttcttttatatccacagg 24999065  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 38979700 - 38979883
Alignment:
Q  136 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgt 235  Q
    ||||||||||||| ||||||||||||||||||||||| |        ||||||||||||||||| ||||   |||||||||| |||||||||| ||||||    
T  38979700 atatagtagaagtagcttcatagatgttgtattttatagtgttttttccttatatgcatttgaattcctcgagaatgaattacattaccatcacgaatgt 38979799  T
Q  236 ggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 319  Q
    |         |||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  38979800 gtttttttttgttaatcctctaggtgcgacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 38979883  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 51423942 - 51424126
Alignment:
Q  136 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 233  Q
    ||||||||||||| |||||||||||||| ||||||||  ||        ||||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  51423942 atatagtagaagtggcttcatagatgttttattttatagtgttttttttccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 51424041  T
Q  234 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 319  Q
    |||        ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  51424042 gtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 51424126  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 183 - 319
Target Start/End: Original strand, 11685962 - 11686097
Alignment:
Q  183 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 282  Q
    ||||||||||||||||| ||||  | || |||||| ||||||||||||||||||        ||||||||||||| |||||| ||||||||||| |||||    
T  11685962 ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaagagttagagtatgtatat 11686060  T
Q  283 gcaagttatgctttgaagagttcttatgttaatttta 319  Q
    |||||||||||||||| || |||||||||||||||||    
T  11686061 gcaagttatgctttgatgatttcttatgttaatttta 11686097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 183 - 319
Target Start/End: Original strand, 8211560 - 8211695
Alignment:
Q  183 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 282  Q
    ||||||||||||||||| ||||    || |||||| ||||||||||||||||||        ||||||||||||| |||||||||||||||||| ||| |    
T  8211560 ccttatatgcatttgaattcctcgacaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatct 8211658  T
Q  283 gcaagttatgctttgaagagttcttatgttaatttta 319  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8211659 gcaagttatgctttgatgagttcttatgttaatttta 8211695  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 9289755 - 9289939
Alignment:
Q  136 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 233  Q
    ||||||||||||| |||||||||||||| ||||||||  ||         |||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  9289755 atatagtagaagtggcttcatagatgttttattttatagtgattttttttcttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 9289854  T
Q  234 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 319  Q
     ||        ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||    
T  9289855 atg-tttttttggttaatcctctaggtgcaacagttagagtttgtatctgcaagttatgctttgatgagttcttatgttaatttta 9289939  T

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Target: scaffold0442 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 13222 - 13036
Alignment:
Q  136 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc----ccttatatgcatttgaactccttaggaatgaattatattaccatcatga 231  Q
    ||||||||||||| ||||||||||||||||||||||| |            ||||||||||||||||| ||||  | || |||||| |||||||||| ||    
T  13222 atatagtagaagtggcttcatagatgttgtattttatagtgttttttttttccttatatgcatttgaattcctcggaaacgaattacattaccatcacga 13123  T
Q  232 atgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 319  Q
    |||||        | |||||| |||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  13122 atgtgttatttttg-ttaatcatctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 13036  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 319
Target Start/End: Complemental strand, 7055384 - 7055248
Alignment:
Q  183 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 282  Q
    ||||||||||||||||| ||||  |||| |||||| |||||||||| |||||||         |||||||||||| ||||| ||||||| |||| ||| |    
T  7055384 ccttatatgcatttgaattcctcgggaacgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtgcagcagttagcgtatgtatct 7055285  T
Q  283 gcaagttatgctttgaagagttcttatgttaatttta 319  Q
     ||||||||||||||| ||||||||||||||||||||    
T  7055284 tcaagttatgctttgatgagttcttatgttaatttta 7055248  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 14463253 - 14463069
Alignment:
Q  136 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc-ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatg 234  Q
    ||||||||||||| ||||||||||||||||||||||| |         |||||||| |||||||| ||||  |||| |||||| |||||||||| |||||    
T  14463253 atatagtagaagtggcttcatagatgttgtattttatagtgtttttttccttatattcatttgaattcctcgggaacgaattacattaccatcacgaatg 14463154  T
Q  235 tggnnnnnnng---gttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 319  Q
    ||            |||||||||||| ||||||||||||||   | ||| ||||||||||||||||| |||||||||||| |||||||    
T  14463153 tgttttttttttttgttaatcctctaggtgcaacagttaga---tgtatctgcaagttatgctttgatgagttcttatgtcaatttta 14463069  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 7055434 - 7055398
Alignment:
Q  136 atatagtagaagttgcttcatagatgttgtattttat 172  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7055434 atatagtagaactggcttcatagatgttgtattttat 7055398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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