View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_high_12 (Length: 345)
Name: NF19185_high_12
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 35182153 - 35181846
Alignment:
| Q |
19 |
aagataccttttaaaaaattaaaacttcttttcccatttcatagttgaaatttattcaaccattttgactcccannnnnnntccaccttacctcttgtaa |
118 |
Q |
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| T |
35182153 |
aagataccttttaaaaaattaaaacttcttttcccatttcatagttgaaatttattcaaccattttgattcccaccccccctccaccttacctcttgtaa |
35182054 |
T |
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| Q |
119 |
catgtttaatcttaatgttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgagggctgaag |
218 |
Q |
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| T |
35182053 |
catgtttaatcttaatgttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgagggctgaag |
35181954 |
T |
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| Q |
219 |
cattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagtatcttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181953 |
cattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagtatcttct |
35181854 |
T |
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| Q |
319 |
gtggtatg |
326 |
Q |
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|||||||| |
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| T |
35181853 |
gtggtatg |
35181846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 113 - 326
Target Start/End: Complemental strand, 35176116 - 35175906
Alignment:
| Q |
113 |
ttgtaacatgtttaatcttaatgttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgaggg |
212 |
Q |
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|||||| ||||||| ||||||| |||||||||||||||||| |||| ||||| |||||| || ||||||||||||||||||||||||||| | |||||| |
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| T |
35176116 |
ttgtaatatgtttattcttaatactttcagggaacaaacaatgttaaagccattattctaaataaaaaagagcatatctctgaatatcctccgctgaggg |
35176017 |
T |
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| Q |
213 |
ctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagta |
312 |
Q |
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| T |
35176016 |
ccgaaggattgtcaataatgaggggacttaaaattcttatattata---tcatcaaaaaatttcaggaagtctcaatttcatttctaacagcttgcagta |
35175920 |
T |
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| Q |
313 |
tcttctgtggtatg |
326 |
Q |
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| T |
35175919 |
tcttctttggtatg |
35175906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 136 - 326
Target Start/End: Complemental strand, 35052752 - 35052565
Alignment:
| Q |
136 |
ttttcagggaacaaacaatattaatgccataattctagatcaaaaagagcatatctctgaatatcctcagttgagggctgaagcattgtcaataatgagg |
235 |
Q |
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||||||||||||| |||| |||| ||||||||| ||||| |||||||| ||||||| |||||||||| ||| | |||||||| |||||||||||||||| |
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| T |
35052752 |
ttttcagggaacagacaaggttaaagccataattttagataaaaaagaggatatctcggaatatcctctgttaaaggctgaaggattgtcaataatgagg |
35052653 |
T |
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| Q |
236 |
ggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcagtatcttctgtggtatg |
326 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
35052652 |
ggacttaaaattcttata---ttatatcatacaaatttttcaggaagtctcaacttcctttctaacagcttgcagtatcttctgtggtatg |
35052565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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