View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_high_17 (Length: 302)
Name: NF19185_high_17
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 6870506 - 6870236
Alignment:
| Q |
3 |
aaaaccatcacatattcacaatttagtacagtttcacacataatataaaaatggggtgttacactacacatcttctctttcttcannnnnnnnnaagact |
102 |
Q |
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| T |
6870506 |
aaaaccatcacatactcacaatttagcacagtttcacacataatataaaaatggggtgttacac---acatcttctctttcttcatttttttt-aagact |
6870411 |
T |
|
| Q |
103 |
tctctctatttatttatgttaaatatcattcaaataattaattggttcacacctctattagtacaactcattaacgtgaagtacatgttcttccatcttg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6870410 |
tctctctatttatttatgttaaatatcattcaaataattaattggttcacacctctattagtacaactcattaacgtgaagtacatgttcttccatcttg |
6870311 |
T |
|
| Q |
203 |
tttgatgaaatagaacacattcatttcattcattaatctctccaactagtttgtattgtattgtattgtcttgtg |
277 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
6870310 |
tttgatgaaataggacacattcatttcatttattaatctctccaactagtttgtattgcattgtattgtattgtg |
6870236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 31667547 - 31667598
Alignment:
| Q |
3 |
aaaaccatcacatattcacaatttagtacagtttcacacataatataaaaat |
54 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31667547 |
aaaaccatcacatattcacaatttagtacagtttcacacataatataaaaat |
31667598 |
T |
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