View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19185_high_19 (Length: 298)
Name: NF19185_high_19
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 26 - 295
Target Start/End: Original strand, 12364815 - 12365084
Alignment:
| Q |
26 |
tcaaagattggttttcgaggtatgatttcactgtaaaacatatcaaaggaaatcgaaacataatccctgatttactttccagaccaatgaaacttgtcca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12364815 |
tcaaagattggttttcgaggtatgattttactgtaaaacatatcaaagtaaatcaaaacttaatccctgatttactttccagaccaatgaaacctgtcca |
12364914 |
T |
|
| Q |
126 |
gatcattaccaacactcacacattttcgttaatcctcatggtaaaaccattaccagctcatggctccatcattatgaatttttctcctgggataaattct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
12364915 |
gatcattaccaacactcacacatttccgttaatcctcatggtaaaaccattaccagctcatgcctccatcattaagaattttcctcctgggataaatttt |
12365014 |
T |
|
| Q |
226 |
tcatgctcactatcccaactcaaagaatatgccagaaacaacattatttactttctgaccaaaatcataa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||||||||| |
|
|
| T |
12365015 |
tcatgctcactatcccaactcaaagaatatgccagaaacaaccttttttactttatggcaaaaatcataa |
12365084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University