View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19185_high_2 (Length: 787)

Name: NF19185_high_2
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19185_high_2
NF19185_high_2
[»] chr5 (22 HSPs)
chr5 (7-701)||(26439894-26440590)
chr5 (399-499)||(8590126-8590226)
chr5 (399-503)||(19366759-19366863)
chr5 (400-512)||(14148276-14148386)
chr5 (399-509)||(32310937-32311047)
chr5 (401-470)||(5471460-5471529)
chr5 (399-490)||(932135-932225)
chr5 (403-470)||(26295522-26295589)
chr5 (244-302)||(26452364-26452422)
chr5 (582-686)||(26452170-26452275)
chr5 (433-508)||(36301222-36301297)
chr5 (400-503)||(41868784-41868887)
chr5 (456-509)||(26296444-26296497)
chr5 (442-503)||(5024924-5024984)
chr5 (400-509)||(23160533-23160641)
chr5 (399-511)||(5091783-5091895)
chr5 (399-503)||(7313209-7313313)
chr5 (51-125)||(34278584-34278659)
chr5 (438-502)||(2673281-2673343)
chr5 (429-511)||(19336813-19336896)
chr5 (456-509)||(24181454-24181507)
chr5 (431-508)||(32146692-32146769)
[»] chr1 (17 HSPs)
chr1 (399-509)||(35285474-35285584)
chr1 (379-480)||(26127291-26127392)
chr1 (388-511)||(35538954-35539077)
chr1 (409-511)||(963953-964055)
chr1 (399-499)||(14171826-14171926)
chr1 (402-502)||(49065957-49066056)
chr1 (403-509)||(43638348-43638454)
chr1 (412-501)||(38680344-38680433)
chr1 (399-490)||(15822687-15822780)
chr1 (382-470)||(43143255-43143343)
chr1 (428-502)||(26537490-26537565)
chr1 (399-470)||(47473835-47473905)
chr1 (423-512)||(28782885-28782974)
chr1 (406-496)||(18351691-18351781)
chr1 (401-444)||(27919124-27919167)
chr1 (401-508)||(42887975-42888082)
chr1 (399-448)||(36378159-36378208)
[»] chr2 (17 HSPs)
chr2 (381-509)||(45716432-45716560)
chr2 (380-511)||(8329650-8329781)
chr2 (399-502)||(33635700-33635803)
chr2 (400-502)||(19511100-19511201)
chr2 (403-491)||(25749689-25749777)
chr2 (399-499)||(7820037-7820137)
chr2 (424-508)||(32143615-32143699)
chr2 (399-477)||(6599346-6599425)
chr2 (397-511)||(20493614-20493725)
chr2 (383-509)||(29108713-29108839)
chr2 (402-499)||(15988839-15988936)
chr2 (399-511)||(36101001-36101112)
chr2 (398-508)||(15658802-15658912)
chr2 (438-511)||(9620625-9620698)
chr2 (428-496)||(29740718-29740786)
chr2 (66-127)||(14802786-14802848)
chr2 (440-509)||(12798968-12799037)
[»] chr8 (22 HSPs)
chr8 (381-512)||(27924480-27924611)
chr8 (400-499)||(37940455-37940554)
chr8 (400-502)||(13015378-13015480)
chr8 (399-509)||(42563193-42563303)
chr8 (413-509)||(26491455-26491552)
chr8 (388-511)||(5323748-5323874)
chr8 (379-508)||(16938900-16939028)
chr8 (445-511)||(4366318-4366384)
chr8 (382-509)||(44362291-44362410)
chr8 (399-509)||(44801472-44801582)
chr8 (402-499)||(10457264-10457361)
chr8 (399-476)||(33986892-33986969)
chr8 (401-509)||(24184538-24184645)
chr8 (400-499)||(18087198-18087296)
chr8 (400-501)||(32041836-32041937)
chr8 (399-509)||(34127660-34127771)
chr8 (428-502)||(7662289-7662363)
chr8 (446-511)||(468131-468196)
chr8 (399-508)||(8457503-8457612)
chr8 (399-509)||(12493364-12493474)
chr8 (449-511)||(30157746-30157808)
chr8 (449-511)||(45114684-45114746)
[»] chr4 (24 HSPs)
chr4 (379-509)||(47742724-47742854)
chr4 (399-511)||(36619881-36619993)
chr4 (400-509)||(12763380-12763489)
chr4 (379-499)||(53374927-53375047)
chr4 (380-502)||(36860302-36860422)
chr4 (399-511)||(26194538-26194650)
chr4 (399-509)||(1955291-1955402)
chr4 (399-502)||(48743473-48743576)
chr4 (372-509)||(34015725-34015862)
chr4 (399-508)||(49081256-49081364)
chr4 (409-509)||(41454924-41455024)
chr4 (439-512)||(19466029-19466102)
chr4 (398-503)||(33033196-33033301)
chr4 (399-511)||(21139269-21139381)
chr4 (433-502)||(32056298-32056367)
chr4 (52-112)||(20651582-20651642)
chr4 (445-509)||(50498876-50498940)
chr4 (399-502)||(42274289-42274392)
chr4 (399-441)||(38575802-38575844)
chr4 (399-477)||(41736734-41736811)
chr4 (438-480)||(42915771-42915813)
chr4 (427-509)||(45983187-45983269)
chr4 (399-480)||(26206075-26206155)
chr4 (401-509)||(37858397-37858506)
[»] chr3 (22 HSPs)
chr3 (371-506)||(40892798-40892933)
chr3 (399-509)||(53653115-53653224)
chr3 (399-509)||(50662431-50662541)
chr3 (383-498)||(29793438-29793553)
chr3 (399-502)||(38832964-38833069)
chr3 (399-511)||(27659710-27659822)
chr3 (401-509)||(52762955-52763063)
chr3 (413-508)||(9099140-9099237)
chr3 (399-509)||(31977216-31977328)
chr3 (399-490)||(46476452-46476544)
chr3 (413-508)||(23089266-23089361)
chr3 (399-511)||(32497784-32497896)
chr3 (399-509)||(36754730-36754840)
chr3 (399-476)||(51459790-51459868)
chr3 (438-512)||(51490203-51490277)
chr3 (413-508)||(23086444-23086539)
chr3 (443-502)||(34664271-34664330)
chr3 (373-499)||(277548-277674)
chr3 (400-477)||(39149166-39149243)
chr3 (459-511)||(49980313-49980365)
chr3 (433-482)||(11045910-11045959)
chr3 (444-509)||(55142341-55142406)
[»] chr6 (9 HSPs)
chr6 (371-508)||(31330522-31330659)
chr6 (406-501)||(30533672-30533768)
chr6 (399-476)||(9245944-9246021)
chr6 (404-491)||(11393684-11393771)
chr6 (424-511)||(29608449-29608536)
chr6 (460-509)||(2656431-2656480)
chr6 (399-460)||(2667396-2667457)
chr6 (430-511)||(2158096-2158177)
chr6 (460-509)||(2667086-2667135)
[»] scaffold0007 (1 HSPs)
scaffold0007 (399-509)||(185450-185560)
[»] chr7 (8 HSPs)
chr7 (401-509)||(45879114-45879222)
chr7 (399-463)||(28359734-28359798)
chr7 (399-509)||(6221049-6221158)
chr7 (399-509)||(9047097-9047206)
chr7 (399-512)||(34224272-34224385)
chr7 (382-511)||(30898032-30898161)
chr7 (428-509)||(30198320-30198401)
chr7 (399-511)||(40417641-40417751)
[»] scaffold0191 (1 HSPs)
scaffold0191 (378-508)||(4544-4674)
[»] scaffold0009 (1 HSPs)
scaffold0009 (401-509)||(140264-140372)
[»] scaffold1095 (1 HSPs)
scaffold1095 (401-508)||(873-982)
[»] scaffold0257 (1 HSPs)
scaffold0257 (399-489)||(18845-18936)
[»] scaffold0275 (1 HSPs)
scaffold0275 (401-470)||(415-486)
[»] scaffold0735 (1 HSPs)
scaffold0735 (401-508)||(928-1035)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 701
Target Start/End: Complemental strand, 26440590 - 26439894
Alignment:
Q  7 tcgaagaatattaacaatatatcaaattttcataannnnnnnnnaatagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagag 106  Q
    |||| |||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| || ||| |||||||     
T  26440590 tcgatgaatattatcaatatatcaaattttcataatttttttt-aatagataataaaaaatatttaagttcaaagttgtacattgacatacgtgacaga- 26440493  T
Q  107 tcaactggtcatataatatagaactgaaggaatatctttttacttgtttt---------tacctatagactattttgacgcg-cttttcaattgctagag 196  Q
       | || ||| |||||||| |||||||| |||||||||| | |||||||         ||||||||||||||||||||||| |||||||||||||||||    
T  26440492 ---agtg-tcacataatataaaactgaagaaatatcttttcatttgttttaaagcaccgtacctatagactattttgacgcgtcttttcaattgctagag 26440397  T
Q  197 tccaattcttaaaattgagtaaaatgnnnnnnnnnncttttcaaagtaacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaaca 296  Q
    ||||||||| ||||||||| ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26440396 tccaattctcaaaattgagcaaaatgtttttcttttcttttcaaagtaacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaaca 26440297  T
Q  297 taatgattaatgtgccagnnnnnnnnnnncataatgattnnnnnnnggaattttcgcaataaattttttaaaggcagtgtctccggggcactagtaaaga 396  Q
    ||||||||||||||||||           ||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  26440296 taatgattaatgtgccagaaaaaaaaaa-cataatgattaaaaaaaggaattttcgcaataaattttttaaatgcagtgtctccggggcactagttaaga 26440198  T
Q  397 tgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttt 496  Q
    |  ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| || |  ||||||||||||    
T  26440197 ttttaaaagtagaaagaaaagtcaaattttgcattaaaaataacacttttttaacttttaaaaagtagaatacacaatttctaaaaagatatttcatttt 26440098  T
Q  497 ataattctttaacaaagggcactcgttaacatttcccattttttaatagtgcaatccctatgttccttgttataagcaaatgttcgttcagcaattgctt 596  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  26440097 ataattccttaacaaaga-cactcgttaacatttcccattttttaatagtacattccatatgttccttgttataagcaaatgttcgttcagcaattgctt 26439999  T
Q  597 atacattccatagccatcattttttgttacaacttcgaaaaccagagtataagaaaagctctaaagtttgttctataaaatattattttacgtacatatg 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26439998 atacattccatagccatcattttttgttacaacttcgaaaaccagagtataagaaaagctctaaagtttgttctataaaatattattttacgtacatatg 26439899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 8590226 - 8590126
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||| | |||||||  ||||||    
T  8590226 ctaaaagtagaaaacaaagtcaaattttgcattgaaaataacacttttttaacttttaaaaggtaaaatacacaatttccaaaaaaatattttcttttat 8590127  T
Q  499 a 499  Q
    |    
T  8590126 a 8590126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 19366759 - 19366863
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||| ||||||||| |||| |||| ||| |||||| |||||| ||||||||||||||| ||||||||| | ||| |||| ||||||    
T  19366759 ctaaaagtagaaagaaaaatcaaattttgcattaaaaaaaactctttttcaactttcaaaaagtagaatacacaatttccaagacaatgtttccttttat 19366858  T
Q  499 aattc 503  Q
    |||||    
T  19366859 aattc 19366863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 512
Target Start/End: Original strand, 14148276 - 14148386
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||| |||||||||||||||||||||  ||| |||| || |  ||||||||||| ||||||||||||||| ||||||||| ||||||| || |||||||    
T  14148276 taaaaatagaaagaaaagtcaaattttgaattaaaaagaata--tttttaactttcaaaaagtagaatacacaatttccaagataatatgtctttttata 14148373  T
Q  500 attctttaacaaa 512  Q
    |||| ||||||||    
T  14148374 attccttaacaaa 14148386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 32310937 - 32311047
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacac-ttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttta 497  Q
    |||||||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||| ||||||||| |||   ||||| | |||||| |||||    
T  32310937 ctaaaagtagaaagaaaagtaaacttttgcattgaaaataacactttttttaacttttaaaaa-tagaatacacaatgatcaatacactatttcctttta 32311035  T
Q  498 taattctttaac 509  Q
    |||||| |||||    
T  32311036 taattcattaac 32311047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 5471460 - 5471529
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaataca 470  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  5471460 aaaaatagaaagaaaaatcaaattttacattaaaaataacacttttttaactttcaaaaagtaaaataca 5471529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 399 - 490
Target Start/End: Complemental strand, 932225 - 932135
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatattt 490  Q
    ||||||||||||| |||| |||| |||| ||||||||| |||| |||||||||||| |||||||| |||||| ||||||||||| |||||||    
T  932225 ctaaaagtagaaaaaaaa-tcaagttttgcattgaaaagaacatttttttaactttaaaaaagtaaaatacacaatttccaatacaatattt 932135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 26295522 - 26295589
Alignment:
Q  403 aagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaataca 470  Q
    |||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||    
T  26295522 aagtagaaagtaaagtcaagttttacattgaaaagaacatttttttaacttttaaaaaatagaataca 26295589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 26452422 - 26452364
Alignment:
Q  244 aacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaacataatga 302  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  26452422 aacattgagtaaattgttgatctttttgataaaaacataatgattaaaaagcataatga 26452364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 582 - 686
Target Start/End: Complemental strand, 26452275 - 26452170
Alignment:
Q  582 gttcagcaattgcttatacattccatagccatcattttt-tgttacaacttcgaaaaccagagtataagaaaagctctaaagtttgttctataaaatatt 680  Q
    ||||| ||||||| ||||||||||||||| ||| ||||| | |||||||||| ||||| | ||||| ||||||||||| ||||||||| | |||||||||    
T  26452275 gttcatcaattgcatatacattccatagcaatcttttttgtattacaacttctaaaactaaagtatgagaaaagctctgaagtttgttttgtaaaatatt 26452176  T
Q  681 atttta 686  Q
     |||||    
T  26452175 ttttta 26452170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 36301297 - 36301222
Alignment:
Q  433 aaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||| || |||||||||  ||||||||||| ||||    
T  36301297 aaaataacacttttttaacttttaaaatgtaaaatacacaatttctaaaataatattttcttttataattccttaa 36301222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 503
Target Start/End: Original strand, 41868784 - 41868887
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    |||||||||||| | || ||||||||| |||| |||| || | || || ||||||||||||||| |||||| |||||| || |||||||||| |||||||    
T  41868784 taaaagtagaaatataaatcaaattttgcattaaaaagaataattcttcaacttttaaaaagtaaaatacacaatttctaagataatatttccttttata 41868883  T
Q  500 attc 503  Q
    ||||    
T  41868884 attc 41868887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 509
Target Start/End: Original strand, 26296444 - 26296497
Alignment:
Q  456 aaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  26296444 aaaaagtagaatacacaatttccaatacaatatttccttttataattctttaac 26296497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 5024924 - 5024984
Alignment:
Q  442 cttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattc 503  Q
    |||||||||||||||||||||||||||| | ||||| |||| ||| ||||||||| ||||||    
T  5024924 cttttttaacttttaaaaagtagaatac-acatttctaataaaatgtttcattttttaattc 5024984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 23160533 - 23160641
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||||||||  |||||  |||||||| ||||||||| |||||||||| ||||||| |||||| |||||   |||||   | |||||||||| ||| |||    
T  23160533 taaaagtagaccgaaaaaacaaattttgcattgaaaa-aacactttttcaacttttcaaaagttgaatattcaattttgtagataatatttcgtttcata 23160631  T
Q  500 attctttaac 509  Q
    ||||||||||    
T  23160632 attctttaac 23160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 5091895 - 5091783
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||||||||| |||  |||   ||||||| | |||||||| |||||| |||||||| |||||| ||||| | |  |||  |||| ||||||    
T  5091895 ctaaaagtagaaagaaaagacaagatttgttttgaaaagagcactttttcaactttcaaaaagtataatacacaattttcgaggtaagttttccttttat 5091796  T
Q  499 aattctttaacaa 511  Q
    ||||| |||||||    
T  5091795 aattccttaacaa 5091783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 7313209 - 7313313
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||| ||| ||||||||  ||| || | ||| ||||||||||||||| || ||| ||||||||  ||||| ||||| ||| | |||||||| ||||||    
T  7313209 ctaaaaatagtaagaaaagataaaattaatattaaaaataacactttttcaagtttcaaaaagtaatatacacaattttcaagaaaatatttctttttat 7313308  T
Q  499 aattc 503  Q
    |||||    
T  7313309 aattc 7313313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 34278659 - 34278584
Alignment:
Q  51 aatagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagagtcaact-ggtcatataatat 125  Q
    ||||||| || ||| ||||||||||| ||| ||||||||| || |||| ||||||||||||| ||||| |||||||    
T  34278659 aatagattattaaatatatttaagtttaaaattgtacattgacatacacgacagagtcaactaggtcacataatat 34278584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 502
Target Start/End: Complemental strand, 2673343 - 2673281
Alignment:
Q  438 aacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataatt 502  Q
    ||||||||||||  |||||||||||| |||| | ||||| |||  ||||||||||||||||||||    
T  2673343 aacactttttta--ttttaaaaagtaaaatatataattttcaaattaatatttcattttataatt 2673281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 511
Target Start/End: Original strand, 19336813 - 19336896
Alignment:
Q  429 attgaaaataacactttt--ttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    ||||||||||||| ||||  |||||||| ||||||||||||||| |||||  || | |||| ||||||||||||||  |||||||    
T  19336813 attgaaaataacatttttttttaactttcaaaaagtagaatacacaatttttaagaaaata-ttcattttataatttcttaacaa 19336896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 509
Target Start/End: Complemental strand, 24181507 - 24181454
Alignment:
Q  456 aaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    |||||||| |||||| ||||| ||||| |||||||| ||||||||||| |||||    
T  24181507 aaaaagtaaaatacacaattttcaatacaatatttccttttataattccttaac 24181454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 508
Target Start/End: Original strand, 32146692 - 32146769
Alignment:
Q  431 tgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    ||||||||| | ||| | ||||||||||||||||||| || |||||  || |||| | |||||||| |||||||||||    
T  32146692 tgaaaataatattttctcaacttttaaaaagtagaatgcataatttgaaaaataacaattcattttttaattctttaa 32146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 35285584 - 35285474
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||| ||||||| |||||||    
T  35285584 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaaataaaatacacaatttctaatacaatattttattttat 35285485  T
Q  499 aattctttaac 509  Q
    | ||| |||||    
T  35285484 atttccttaac 35285474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 379 - 480
Target Start/End: Complemental strand, 26127392 - 26127291
Alignment:
Q  379 ccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttcc 478  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  26127392 ccggggcactagttaaggaactaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaactttcaaaaagtagaatacacaatttcc 26127293  T
Q  479 aa 480  Q
    ||    
T  26127292 aa 26127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 388 - 511
Target Start/End: Complemental strand, 35539077 - 35538954
Alignment:
Q  388 tagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataata 487  Q
    |||| ||||||||||||  | || |||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||| | ||||||| | ||||    
T  35539077 tagttaagatgctaaaaacataatgaaaagtcaaattttacattaaaaagaacacttttttaacttttaaaaaataaaatacacagtttccaaaacaata 35538978  T
Q  488 tttcattttataattctttaacaa 511  Q
    |||||||||||||||  |||||||    
T  35538977 tttcattttataatttcttaacaa 35538954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 964055 - 963953
Alignment:
Q  409 aaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    |||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| | |||||||| | ||||||||| ||||    
T  964055 aaagaaaagttaagttttacattgaaaagaacacttttttaactttgaaaaagtagaatacacaatttccaagacaatatttcctattataattccttaa 963956  T
Q  509 caa 511  Q
    |||    
T  963955 caa 963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 14171926 - 14171826
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||||| || |||| ||||||||| |||| |||||||||||| |||||||| |||||| ||||| ||| | |||||||  ||||||    
T  14171926 ctaaaagtagaaagaaaagtgaagttttgcattgaaaaaaacatttttttaactttcaaaaagtaaaatacacaattttcaagacaatattttcttttat 14171827  T
Q  499 a 499  Q
    |    
T  14171826 a 14171826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 402 - 502
Target Start/End: Original strand, 49065957 - 49066056
Alignment:
Q  402 aaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataat 501  Q
    |||||| |||||||||| ||||||| ||||||||| || ||||||||||||||||||||| | |||||| ||||||||| |||| ||||  |||||||||    
T  49065957 aaagtaaaaagaaaagtaaaattttgcattgaaaaaaagacttttttaacttttaaaaagaaaaatacacaatttccaaaataa-attttcttttataat 49066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 43638348 - 43638454
Alignment:
Q  403 aagtagaaagaaaagtcaaattttacattgaaaataacacttttttaactttt-aaaaagtagaatacaaaatttccaatataatatttcattttataat 501  Q
    |||||||||||||  |||| ||||||||||||||||||| ||||||   |||| ||||||||||||||| ||||| ||| | |||||||| |||||||||    
T  43638348 aagtagaaagaaat-tcaagttttacattgaaaataacattttttttgattttcaaaaagtagaatacacaattttcaagacaatatttccttttataat 43638446  T
Q  502 tctttaac 509  Q
    || |||||    
T  43638447 tccttaac 43638454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 412 - 501
Target Start/End: Original strand, 38680344 - 38680433
Alignment:
Q  412 gaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataat 501  Q
    |||||||||||||||  |||||||| |||||||||||||||||| ||||||| |||  | ||||||| | | |||||||| |||||||||    
T  38680344 gaaaagtcaaattttgtattgaaaaaaacacttttttaactttttaaaagtataatttacaatttccgagacaatatttccttttataat 38680433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 490
Target Start/End: Complemental strand, 15822780 - 15822687
Alignment:
Q  399 ctaaaagtagaaagaaaag--tcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatattt 490  Q
    ||||||||||||||||||   ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| || ||||| ||||| |||||||    
T  15822780 ctaaaagtagaaagaaaaaaatcaaattttgcattcaaaacaacatttttttaactttcaaaaaatagaatgcacaattttcaatacaatattt 15822687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 470
Target Start/End: Complemental strand, 43143343 - 43143255
Alignment:
Q  382 gggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaataca 470  Q
    |||||||||| ||||   |||||||||||||||||  |||  |||| ||||||||||||| ||||| |||||| |||||||| ||||||    
T  43143343 gggcactagttaagaaaataaaagtagaaagaaaatacaagatttatattgaaaataacattttttcaactttcaaaaagtataataca 43143255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 428 - 502
Target Start/End: Complemental strand, 26537565 - 26537490
Alignment:
Q  428 cattgaaaataacacttttttaacttttaaaaagtag-aatacaaaatttccaatataatatttcattttataatt 502  Q
    |||||||||||||||||||||||||||  |||||||| |||| | ||||| ||| ||| |||||| ||||||||||    
T  26537565 cattgaaaataacacttttttaactttagaaaagtagtaatatacaattttcaaaatagtatttccttttataatt 26537490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 47473905 - 47473835
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaataca 470  Q
    |||||||||||||||||| | || |||| ||||||||| |||||| |||||||||| |||||||||| ||||    
T  47473905 ctaaaagtagaaagaaaaattaagttttgcattgaaaa-aacactgttttaactttcaaaaagtagattaca 47473835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 512
Target Start/End: Complemental strand, 28782974 - 28782885
Alignment:
Q  423 ttttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaaa 512  Q
    |||||||||||||||||| | |||| |||||| ||| ||||  ||||| | |||||||  ||| |||||||||| |||||| ||||||||    
T  28782974 ttttacattgaaaataactcattttcaactttcaaagagtattatacatattttccaaggtaacatttcattttttaattccttaacaaa 28782885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 496
Target Start/End: Original strand, 18351691 - 18351781
Alignment:
Q  406 tagaaagaaaagtcaaattttacattgaaaataacacttttttaacttt-taaaaagtagaatacaaaatttccaatataatatttcatttt 496  Q
    |||||||||| | |||||||   |||||||||||||| ||||||| |||  |||||||| |||||| |||||| ||||||||||||| ||||    
T  18351691 tagaaagaaaggacaaatttggaattgaaaataacacctttttaaatttaaaaaaagta-aatacacaatttctaatataatatttcctttt 18351781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 27919124 - 27919167
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacactt 444  Q
    |||||||||||||||  |||||||||||||| ||||||||||||    
T  27919124 aaaagtagaaagaaatttcaaattttacattaaaaataacactt 27919167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 508
Target Start/End: Complemental strand, 42888082 - 42887975
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataa 500  Q
    ||||||||||||||||  |||| |  ||||| |||  ||||  |||| || ||| |||||||| |||||| ||||| ||| | |||||||| ||||||||    
T  42888082 aaaagtagaaagaaaaaacaaaatcaacattaaaagcaacatcttttcaagtttgaaaaagtaaaatacataattttcaagaaaatatttccttttataa 42887983  T
Q  501 ttctttaa 508  Q
    ||||||||    
T  42887982 ttctttaa 42887975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 36378208 - 36378159
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacactttttt 448  Q
    ||||||||| |||||||||| |||||||||||| |||| ||| |||||||    
T  36378208 ctaaaagtaaaaagaaaagtaaaattttacattaaaaagaacgctttttt 36378159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 381 - 509
Target Start/End: Original strand, 45716432 - 45716560
Alignment:
Q  381 ggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaa 480  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  45716432 ggggcactagttaaggaactaaaagtagaaagaaaagtcaaattttgtattgaaaataacacttttttaactttcaaaaagtagaatccataatttccaa 45716531  T
Q  481 tataatatttcattttataattctttaac 509  Q
     | |||||||| ||||||||||| |||||    
T  45716532 gacaatatttccttttataattccttaac 45716560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 380 - 511
Target Start/End: Complemental strand, 8329781 - 8329650
Alignment:
Q  380 cggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttcca 479  Q
    |||||||||||| |||   |||||||||||||||||| |||| |||| |||| |||| |||||  |||||||||| ||||||||||||||| ||||||||    
T  8329781 cggggcactagttaaggaactaaaagtagaaagaaaattcaagttttgcattaaaaagaacaccattttaactttcaaaaagtagaatacataatttcca 8329682  T
Q  480 atataatatttcattttataattctttaacaa 511  Q
    | |||||||||| || |||||||| |||||||    
T  8329681 aaataatatttccttatataattccttaacaa 8329650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 399 - 502
Target Start/End: Complemental strand, 33635803 - 33635700
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||| |||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||| ||||||||| | |||||||  ||||||    
T  33635803 ctaaaaatagaaagaaaagtcaagttttatatcgaaaagaatacttttttaacttttaaaaagtagaatacacaatttccaagacaatattttcttttat 33635704  T
Q  499 aatt 502  Q
    ||||    
T  33635703 aatt 33635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 502
Target Start/End: Original strand, 19511100 - 19511201
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||| ||| | ||||||||| | |||||||||| |||||    
T  19511100 taaaagtagaaagaaaaatcaaattttacattgaaaacaacacttttttaattttgaaaaagtag-atagataatttccaagacaatatttcatcttata 19511198  T
Q  500 att 502  Q
    |||    
T  19511199 att 19511201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 403 - 491
Target Start/End: Complemental strand, 25749777 - 25749689
Alignment:
Q  403 aagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttc 491  Q
    |||||||||||||||| || |||| ||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||| | ||||||||    
T  25749777 aagtagaaagaaaagtaaagttttgcattgaaaagaacacttttttaactttcaaaaaatagaatacacaatttccaagaaaatatttc 25749689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 7820137 - 7820037
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||| | || |||| ||||||| |||| | |||||||||||| ||||||||||||| | |||||| || | |||||||| ||||||    
T  7820137 ctaaaagtagaaagaaaaattaatttttgcattgaacataatatttttttaactttcaaaaagtagaatatacaatttcgaagacaatatttccttttat 7820038  T
Q  499 a 499  Q
    |    
T  7820037 a 7820037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 424 - 508
Target Start/End: Complemental strand, 32143699 - 32143615
Alignment:
Q  424 tttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||| ||||| ||| | |||||||  |||| |||||||||||    
T  32143699 tttacattgaaaataacaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatattttcttttctaattctttaa 32143615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 6599346 - 6599425
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataaca-cttttttaacttttaaaaagtagaatacaaaatttc 477  Q
    ||||||||||||||||||||||| |||| |||||||||  |||  |||||||||||| |||||||| |||||| ||||||    
T  6599346 ctaaaagtagaaagaaaagtcaagttttgcattgaaaagtacattttttttaactttcaaaaagtataatacacaatttc 6599425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 511
Target Start/End: Original strand, 20493614 - 20493725
Alignment:
Q  397 tgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttt 496  Q
    |||||||||||||||| |||||||||||||  ||| |||  ||||| ||| ||||||| ||||||||||| |||||  |||  ||| |||||||| ||||    
T  20493614 tgctaaaagtagaaaggaaagtcaaattttgtattaaaatgaacac-tttctaactttcaaaaagtagaacacaaa--ttctcatacaatatttcctttt 20493710  T
Q  497 ataattctttaacaa 511  Q
    ||||||| |||||||    
T  20493711 ataattcgttaacaa 20493725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 509
Target Start/End: Original strand, 29108713 - 29108839
Alignment:
Q  383 ggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaata 482  Q
    ||||||||| ||||  ||||||||||||| |||||  | | |||  |||||||| | || |||||||||||||||||| |  |||||| ||||| ||| |    
T  29108713 ggcactagttaagaaactaaaagtagaaacaaaagctataatttgtattgaaaagagcaattttttaacttttaaaaaatgaaatacacaattttcaaga 29108812  T
Q  483 taatatttcattttataattctttaac 509  Q
     |||||||| ||||||||||| |||||    
T  29108813 aaatatttccttttataattccttaac 29108839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 15988839 - 15988936
Alignment:
Q  402 aaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    |||||||||| |||||| ||| |||||||| ||||  ||||||||| |||||| | ||||||||||||| ||||| ||  | |||||||| |||||||    
T  15988839 aaagtagaaataaaagtaaaactttacattaaaaagtacactttttcaactttcagaaagtagaatacacaattttcatgagaatatttcgttttata 15988936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 36101112 - 36101001
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttac---attgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattt 495  Q
    ||||||||| ||||||||||||| |||||    |||||||| ||||  ||||||||||| |||||||||||||||    |||||| | |||||||| |||    
T  36101112 ctaaaagtataaagaaaagtcaagttttagtatattgaaaagaacatatttttaactttcaaaaagtagaataca----ttccaagacaatatttccttt 36101017  T
Q  496 tataattctttaacaa 511  Q
    |||||||  |||||||    
T  36101016 tataatttcttaacaa 36101001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 508
Target Start/End: Complemental strand, 15658912 - 15658802
Alignment:
Q  398 gctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttta 497  Q
    |||||||||||||||||||   | | ||| |||| |||| | ||  ||||||||||||||||  ||||||||| ||||||||||  |||||||| ||| |    
T  15658912 gctaaaagtagaaagaaaaaatataatttgcattcaaaagagcaactttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaa 15658813  T
Q  498 taattctttaa 508  Q
    |||||| ||||    
T  15658812 taattccttaa 15658802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 511
Target Start/End: Original strand, 9620625 - 9620698
Alignment:
Q  438 aacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    ||||||||||||| ||||||||||||||||| | |||||  || |  ||||||| ||||||||||| |||||||    
T  9620625 aacacttttttaatttttaaaaagtagaatatacaatttttaaaaatatatttctttttataattccttaacaa 9620698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 29740786 - 29740718
Alignment:
Q  428 cattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttt 496  Q
    ||||||||  ||||||||||||| |||||||||||| |||||| ||||||| | | |||||||| ||||    
T  29740786 cattgaaatgaacacttttttaaattttaaaaagtaaaatacacaatttcctagaaaatatttcctttt 29740718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 14802848 - 14802786
Alignment:
Q  66 atatttaagttcaaagttgtacattaacctacatgacagagtcaact-ggtcatataatatag 127  Q
    |||||||||||||||  ||| |||| || ||| |||||||||||||| |||||||||||||||    
T  14802848 atatttaagttcaaatatgtgcattgacatacttgacagagtcaactaggtcatataatatag 14802786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 509
Target Start/End: Complemental strand, 12799037 - 12798968
Alignment:
Q  440 cacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    |||||||| || ||| |||||||| |||||| ||||| | |||  ||||||| |||||||||||||||||    
T  12799037 cactttttcaaatttcaaaaagtaaaatacacaattttcgataatatatttccttttataattctttaac 12798968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 381 - 512
Target Start/End: Complemental strand, 27924611 - 27924480
Alignment:
Q  381 ggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaa 480  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| |||  ||||||||||||||||| ||||||||||||||| ||||| |||    
T  27924611 ggggcactagttaaggtgctaaaagtataaagaaaagtcaaattttaaattaaaatgaacacttttttaactttcaaaaagtagaatacataattttcaa 27924512  T
Q  481 tataatatttcattttataattctttaacaaa 512  Q
     |||||||||  |||| |||||||||||||||    
T  27924511 gataatattttcttttctaattctttaacaaa 27924480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 400 - 499
Target Start/End: Complemental strand, 37940554 - 37940455
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||||||||||||||| |||||||||| ||| |||| |||||||||||||  |||||||||||||||||| ||||||||| |||||||||  |||||||    
T  37940554 taaaagtagaaagaaaaatcaaattttatattaaaaaaaacacttttttaatatttaaaaagtagaatacacaatttccaagataatattttcttttata 37940455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 400 - 502
Target Start/End: Original strand, 13015378 - 13015480
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||||||||||||||||| || |||| |||| |||| ||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||  |||||||    
T  13015378 taaaagtagaaagaaaagttaagttttgcattaaaaacaacacttttttaattttcaaaaagtagaatacacaatttgcaatacaatatttacttttata 13015477  T
Q  500 att 502  Q
    |||    
T  13015478 att 13015480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 42563303 - 42563193
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||| || |||||||||| |||||||||||||| |||| ||| |||||||| ||||| |||||| || ||||| ||||| |||||||| ||||||    
T  42563303 ctaaaagtaaaacgaaaagtcaatttttacattgaaaagaacaatttattaactttcaaaaaatagaatgcagaattttcaatacaatatttccttttat 42563204  T
Q  499 aattctttaac 509  Q
    ||||| |||||    
T  42563203 aattccttaac 42563193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 413 - 509
Target Start/End: Complemental strand, 26491552 - 26491455
Alignment:
Q  413 aaaagtcaaattttacattgaaaataacacttttttaacttttaaaaa-gtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    |||||||||||||| ||||||||| ||||||| |||| |||| ||||| |||||| ||| ||||||||||| |||||||| |||||||||||||||||    
T  26491552 aaaagtcaaattttgcattgaaaacaacacttgtttacctttcaaaaaagtagaacacacaatttccaatacaatatttccttttataattctttaac 26491455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 388 - 511
Target Start/End: Complemental strand, 5323874 - 5323748
Alignment:
Q  388 tagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaactttt----aaaaagtagaatacaaaatttccaatat 483  Q
    |||| ||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||    |||||||||| |||  ||||| ||| ||    
T  5323874 tagttaaggtgctaaaattagaaagaaaagtcaaattttacattaaaaagaacacttttttaaatttttttaaaaaagtagattacgcaattt-caaaat 5323776  T
Q  484 aatatttcattttataattctttaacaa 511  Q
    |||||||||| ||||||||  |||||||    
T  5323775 aatatttcatgttataattgcttaacaa 5323748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 379 - 508
Target Start/End: Complemental strand, 16939028 - 16938900
Alignment:
Q  379 ccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttcc 478  Q
    |||| |||||||| |||| | ||||||||||||||||| | |||||| | |||||||| | ||||||||||||||| ||||||||||||||| ||||| |    
T  16939028 ccggagcactagttaagaagataaaagtagaaagaaaaataaaattt-atattgaaaacagcacttttttaactttaaaaaagtagaatacacaattttc 16938930  T
Q  479 aatataatatttcattttataattctttaa 508  Q
    || | | |||||| | ||||||||| ||||    
T  16938929 aagacactatttcctcttataattccttaa 16938900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 4366318 - 4366384
Alignment:
Q  445 ttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||| |||||||    
T  4366318 ttttaacttttaaaaagtagaatacataattttcaaaataatatttcattttatgattccttaacaa 4366384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 509
Target Start/End: Complemental strand, 44362410 - 44362291
Alignment:
Q  382 gggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaat 481  Q
    |||||||||| |||   ||||||||||||||||| |||||||||| |||||||        |||||||||||| ||||| ||||||||| ||||| ||||    
T  44362410 gggcactagttaaggaactaaaagtagaaagaaatgtcaaattttgcattgaa--------ttttttaactttcaaaaaatagaatacacaattttcaat 44362319  T
Q  482 ataatatttcattttataattctttaac 509  Q
    | |||||||| ||||||||||| |||||    
T  44362318 acaatatttctttttataattccttaac 44362291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 44801582 - 44801472
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||| | ||| ||||||||||||| |||||||||| ||| || |||||| ||||| || |||||| || | || ||||| ||||||    
T  44801582 ctaaaagtagaaagaaaaattaaaatttacattgaaaagaacactttttaaacattcaaaaagcagaatgcacaatttctaagacaaaatttccttttat 44801483  T
Q  499 aattctttaac 509  Q
    ||||| |||||    
T  44801482 aattccttaac 44801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 10457264 - 10457361
Alignment:
Q  402 aaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    |||||||||||||| || |||||||||||| |||| ||   ||||| |||||| |||||||| ||| || ||||||||| ||||||||||||||||||    
T  10457264 aaagtagaaagaaatgtaaaattttacattaaaaaaaaatatttttcaactttcaaaaagtataatgcacaatttccaaaataatatttcattttata 10457361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 33986969 - 33986892
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaattt 476  Q
    |||||||||||||||||||| ||||||| |||| |||| |||||| |||||||||| |||||||| |||||| |||||    
T  33986969 ctaaaagtagaaagaaaagtaaaattttgcattaaaaagaacactattttaactttcaaaaagtaaaatacacaattt 33986892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 24184538 - 24184645
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataa 500  Q
    ||||||| ||||||||||||| |||| ||||||||| | ||| ||||||| ||| |||||| |||||||| ||||||||| | || ||||  ||||||||    
T  24184538 aaaagtataaagaaaagtcaa-ttttgcattgaaaagatcacatttttaattttcaaaaagcagaatacacaatttccaaaacaaaattttcttttataa 24184636  T
Q  501 ttctttaac 509  Q
    |||||||||    
T  24184637 ttctttaac 24184645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 499
Target Start/End: Original strand, 18087198 - 18087296
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    |||||||| |||||| |||||| ||||||||| |||| |||||| |||| ||||| ||||||||||||||| ||||| ||| | |||||||| |||||||    
T  18087198 taaaagtaaaaagaacagtcaa-ttttacattaaaaagaacactgttttgactttcaaaaagtagaatacacaattttcaagagaatatttccttttata 18087296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 501
Target Start/End: Original strand, 32041836 - 32041937
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||| | ||| ||||||||  ||||| || ||| ||   |||||||| |||||||    
T  32041836 taaaagtggaaagaaatgtcaaattttacattaaaaataacacttttttgattttcaaaaagtatgatacataaattctaagggaatatttccttttata 32041935  T
Q  500 at 501  Q
    ||    
T  32041936 at 32041937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 34127771 - 34127660
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatata-atatttcatttta 497  Q
    |||||||| |||||||||| ||   ||||||||||||| | || | |||||||||||||||| ||||||||| ||||||||| | | ||||||| ||||     
T  34127771 ctaaaagtggaaagaaaaggcatgatttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaatttccaagaaatatatttccttttc 34127672  T
Q  498 taattctttaac 509  Q
    |||||| |||||    
T  34127671 taattccttaac 34127660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 502
Target Start/End: Original strand, 7662289 - 7662363
Alignment:
Q  428 cattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataatt 502  Q
    ||||||||| |||| |||| ||||||||||||  ||||||||| ||||||||| | |||||||| ||| ||||||    
T  7662289 cattgaaaaaaacaattttctaacttttaaaatatagaatacacaatttccaaaaaaatatttcctttaataatt 7662363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 468131 - 468196
Alignment:
Q  446 tttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    ||||||||| ||||||||||||| | ||||| ||| | ||||||| ||||||||||| ||||||||    
T  468131 tttaactttcaaaaagtagaatagacaattttcaaaacaatattttattttataattttttaacaa 468196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 508
Target Start/End: Original strand, 8457503 - 8457612
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||| |||||||| ||||| ||   ||||||||||||| | ||   ||| |||||||||||| ||||||||| ||||||||| | |||||||| |||| |    
T  8457503 ctaatagtagaaataaaagacatgatttacattgaaaagagcaacatttcaacttttaaaaaatagaatacacaatttccaagaaaatatttccttttct 8457602  T
Q  499 aattctttaa 508  Q
    ||||| ||||    
T  8457603 aattccttaa 8457612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 12493364 - 12493474
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||| ||| ||||||||  ||| || ||||| |||| |||||||||| || ||||||||| ||  ||||| |||||| || | || ||||| ||||||    
T  12493364 ctaaaaatagcaagaaaagagaaaattaacatttaaaacaacactttttcaagttttaaaaaataacatacataatttctaagaaaacatttctttttat 12493463  T
Q  499 aattctttaac 509  Q
    ||||| |||||    
T  12493464 aattccttaac 12493474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 30157746 - 30157808
Alignment:
Q  449 aacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    |||||| ||||||||||||||| ||||||||| | |||||||| |||||  |||| |||||||    
T  30157746 aactttcaaaaagtagaatacacaatttccaagaaaatatttccttttacgattccttaacaa 30157808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 45114746 - 45114684
Alignment:
Q  449 aacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    |||||||||||  |||| |||| ||||| ||| | || |||||||||||||||||||||||||    
T  45114746 aacttttaaaacatagactacacaattttcaaaaaaaaatttcattttataattctttaacaa 45114684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 379 - 509
Target Start/End: Original strand, 47742724 - 47742854
Alignment:
Q  379 ccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttcc 478  Q
    ||||||||||||| |||   ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||| |||||| || ||||    
T  47742724 ccggggcactagttaaggaactaaaagtagaaagaaatgtcaaattttatattgaaaagaacacttttttaacttttaaaatgtataatacacaaattcc 47742823  T
Q  479 aatataatatttcattttataattctttaac 509  Q
    || |||||||||| ||||||||||| |||||    
T  47742824 aagataatatttccttttataattccttaac 47742854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 36619881 - 36619993
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||||| |||||||| ||||||    
T  36619881 ctaaaaatagaaagaaaagtcaaattttacattgaaaagaacactatttaaacttttaaaaagtaaaatacacaatttccaatacaatatttccttttat 36619980  T
Q  499 aattctttaacaa 511  Q
    ||| | |||||||    
T  36619981 aatcccttaacaa 36619993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 12763380 - 12763489
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttata 499  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||| | ||||||| | |||||||  |||||||    
T  12763380 taaaagtagaaagaaaaatcaaattttgcattgaaaataacactttcttaactttcaaaaagtagaatacacagtttccaaaacaatattttcttttata 12763479  T
Q  500 attctttaac 509  Q
    |||| |||||    
T  12763480 attccttaac 12763489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 379 - 499
Target Start/End: Original strand, 53374927 - 53375047
Alignment:
Q  379 ccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttcc 478  Q
    ||||||||||||| || |  |||||||| |||| |||||| ||||||| |||| |||| |||||||||| |||||||||||||||||||||| |||||||    
T  53374927 ccggggcactagttaacaaactaaaagtggaaataaaagtaaaattttgcatttaaaaaaacactttttcaacttttaaaaagtagaatacacaatttcc 53375026  T
Q  479 aatataatatttcattttata 499  Q
    || | |||||||| |||||||    
T  53375027 aagagaatatttccttttata 53375047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 380 - 502
Target Start/End: Complemental strand, 36860422 - 36860302
Alignment:
Q  380 cggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttcca 479  Q
    |||||||||||| ||||  ||||||||||||| |||||| || |||| |||||||||||||  |||||| | ||| ||||||||||||||| ||||||||    
T  36860422 cggggcactagttaagaaactaaaagtagaaataaaagttaagttttgcattgaaaataac--tttttttaatttcaaaaagtagaatacacaatttcca 36860325  T
Q  480 atataatatttcattttataatt 502  Q
    ||| |||||||| ||||||||||    
T  36860324 atacaatatttctttttataatt 36860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 26194650 - 26194538
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||| ||| | ||| |||| |||  |||| |||||||||| || ||||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  26194650 ctaaaagtagaaataaatgccaacttttgcatcaaaaagaacactttttcaatttttaaaaagttgaatacacaatttacaagataatatttcattttat 26194551  T
Q  499 aattctttaacaa 511  Q
    ||||| |||||||    
T  26194550 aattccttaacaa 26194538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 1955402 - 1955291
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacactttttt-aacttttaaaaagtagaatacaaaatttccaatataatatttcatttta 497  Q
    |||||| || |||||||||||||||||| |||| |||| ||||||||||| |||||| ||||||| ||||| | ||||| ||||| |||||||  |||||    
T  1955402 ctaaaattaaaaagaaaagtcaaatttttcattaaaaagaacactttttttaactttaaaaaagtcgaatatacaattttcaatacaatattttctttta 1955303  T
Q  498 taattctttaac 509  Q
    ||||||||||||    
T  1955302 taattctttaac 1955291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 502
Target Start/End: Complemental strand, 48743576 - 48743473
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||| ||||||||| |||| |||| |||| |||||||| ||| |||||||  ||| || ||||||||||| |||||||| ||||||    
T  48743576 ctaaaagtagaaagaaaaatcaaattttgcattaaaaacaacatttttttaattttcaaaaagtgaaatgcacaatttccaatacaatatttccttttat 48743477  T
Q  499 aatt 502  Q
    ||||    
T  48743476 aatt 48743473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 372 - 509
Target Start/End: Complemental strand, 34015862 - 34015725
Alignment:
Q  372 agtgtctccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaa 471  Q
    ||||||||||| |||||||| |||   | |||||||||||||||| | || ||||  |||||||| ||||| ||||||  ||| ||||||||||||| |     
T  34015862 agtgtctccggagcactagttaaggaaccaaaagtagaaagaaaaattaagttttgtattgaaaaaaacacctttttatttttcaaaaagtagaatatac 34015763  T
Q  472 aatttccaatataatatttcattttataattctttaac 509  Q
    ||||||||| | || ||||  |||||||||||||||||    
T  34015762 aatttccaaaacaaaattttcttttataattctttaac 34015725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 399 - 508
Target Start/End: Original strand, 49081256 - 49081364
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||||||||| ||   ||||||||||||| | || | |||||||||||||||| ||||||||| ||||| ||| | |||||||| |||| |    
T  49081256 ctaaaagtagaaagaaaag-catgatttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaattttcaaaaaaatatttccttttct 49081354  T
Q  499 aattctttaa 508  Q
    ||||||||||    
T  49081355 aattctttaa 49081364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 409 - 509
Target Start/End: Original strand, 41454924 - 41455024
Alignment:
Q  409 aaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    |||||||||||||||||| || | |||| || |||||||||||||| ||||| || |||||| ||||| ||| |||| ||||| ||| ||||||||||||    
T  41454924 aaagaaaagtcaaattttgcaataaaaaaaatacttttttaactttcaaaaaataaaatacacaattttcaagataaaatttcttttcataattctttaa 41455023  T
Q  509 c 509  Q
    |    
T  41455024 c 41455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 512
Target Start/End: Complemental strand, 19466102 - 19466029
Alignment:
Q  439 acacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaaa 512  Q
    |||||||||||||||| |||| ||| |||||| ||||||||| | |||||||||||||||| ||| ||||||||    
T  19466102 acacttttttaactttcaaaaggtaaaatacacaatttccaaaaaaatatttcattttatatttccttaacaaa 19466029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 33033196 - 33033301
Alignment:
Q  398 gctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttta 497  Q
    |||||||||||||| |||||  ||| ||| ||||||||| | || ||||||| |||||||||  ||||||||| ||||||||| | |||||||  |||||    
T  33033196 gctaaaagtagaaataaaagataaaatttgcattgaaaagagcaattttttagcttttaaaacttagaatacacaatttccaagaaaatattttctttta 33033295  T
Q  498 taattc 503  Q
    ||||||    
T  33033296 taattc 33033301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 21139269 - 21139381
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||| ||||||||||||| || ||||  ||| | |  |||||||||| |||||| ||||||||||||||| ||||| ||| ||||| |||  ||||||    
T  21139269 ctaaaaatagaaagaaaagttaagttttgtattaagatgaacactttttcaactttcaaaaagtagaatacataattttcaagataatgttttcttttat 21139368  T
Q  499 aattctttaacaa 511  Q
    ||||  |||||||    
T  21139369 aatttattaacaa 21139381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 32056298 - 32056367
Alignment:
Q  433 aaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataatt 502  Q
    |||| |||| ||||||||||||||||||||| |||||| ||||| ||| | || ||||| ||||||||||    
T  32056298 aaaagaacatttttttaacttttaaaaagtaaaatacacaattttcaagacaaaatttccttttataatt 32056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 20651582 - 20651642
Alignment:
Q  52 atagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagagtcaact 112  Q
    |||||| || ||||||||||||||||||| |||| |||| || ||| ||||||||||||||    
T  20651582 atagattattaaaaatatttaagttcaaaattgtgcattgacatacgtgacagagtcaact 20651642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 50498940 - 50498876
Alignment:
Q  445 ttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    |||||||||| ||||| || |||||| ||||||||| | ||||||| ||||| ||||||||||||    
T  50498940 ttttaactttaaaaaaataaaatacacaatttccaaaaaaatattttattttttaattctttaac 50498876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 502
Target Start/End: Original strand, 42274289 - 42274392
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||||||||| |||  |||||||| |||| |  | | ||| |||||||||||| ||||| ||| ||||| ||| | |||||||| |||| |    
T  42274289 ctaaaagtagaaagaaaagacaagatttacattaaaaagagaaatatttcaacttttaaaaaatagaacacacaattttcaaaaaaatatttccttttct 42274388  T
Q  499 aatt 502  Q
    ||||    
T  42274389 aatt 42274392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 38575844 - 38575802
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataaca 441  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||    
T  38575844 ctaaaagtataaagaaaagtcaaattttacattaaaaagaaca 38575802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 41736811 - 41736734
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttc 477  Q
    |||||| || ||||||||||||| ||||| ||| |||| |||||||||||  |||| |||||||| |||||| ||||||    
T  41736811 ctaaaactaaaaagaaaagtcaagttttatatttaaaa-aacacttttttgtctttcaaaaagtacaatacagaatttc 41736734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 438 - 480
Target Start/End: Complemental strand, 42915813 - 42915771
Alignment:
Q  438 aacacttttttaacttttaaaaagtagaatacaaaatttccaa 480  Q
    ||||||||||||| |||||||||||| |||||| |||||||||    
T  42915813 aacacttttttaagttttaaaaagtaaaatacacaatttccaa 42915771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 509
Target Start/End: Complemental strand, 45983269 - 45983187
Alignment:
Q  427 acattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    ||||| |||| |||||||||| || ||| |||||||| |||||| ||||| | | | || ||||||||||||||||| |||||    
T  45983269 acattaaaaacaacactttttcaaatttcaaaaagtaaaatacacaatttgcgaaaaaacatttcattttataattcattaac 45983187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 26206075 - 26206155
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaa 480  Q
    |||| |||||||||||||||| | ||| ||||| | || | ||| |||||||| ||| |||||||||||||| |||||||||    
T  26206075 ctaacagtagaaagaaaagtcgagtttgacattaagaaaatcacctttttaac-tttcaaaagtagaatacacaatttccaa 26206155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 37858397 - 37858506
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataa-tatttcattttata 499  Q
    ||||||||||||||||  ||   ||| ||||||||| || | | ||| |||||||| ||| ||||||||| ||||||||| | || ||||||||||| ||    
T  37858397 aaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaatttccaaaaaaaatatttcattttcta 37858496  T
Q  500 attctttaac 509  Q
    |||| |||||    
T  37858497 attccttaac 37858506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 371 - 506
Target Start/End: Complemental strand, 40892933 - 40892798
Alignment:
Q  371 cagtgtctccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaataca 470  Q
    ||||| |||||||||| |||| |||   |||||||||||||| |||||||| |||| ||||||||| |||||||| |||||||| |||||||||||||||    
T  40892933 cagtgcctccggggcattagttaaggaactaaaagtagaaaggaaagtcaagttttgcattgaaaagaacactttattaactttcaaaaagtagaataca 40892834  T
Q  471 aaatttccaatataatatttcattttataattcttt 506  Q
     ||||||||| | |||||||| ||||||||||||||    
T  40892833 caatttccaagaaaatatttccttttataattcttt 40892798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 53653224 - 53653115
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| |||||||| ||||  ||||||    
T  53653224 ctaaaagtagaaagaaaagtcaatttttatattgaaaagaacacttttttaac-tttaaaaagtagaatacacaattttcaatataaaattttcttttat 53653126  T
Q  499 aattctttaac 509  Q
    |||||||||||    
T  53653125 aattctttaac 53653115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 50662431 - 50662541
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||| ||| ||||||||||||||  |||||||| |||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  50662431 ctaaaagtataaataaaagtcaaattttgtattgaaaagaacatttttttgactttcaaaaagtagaatagaaaatttccaatataatattttattttat 50662530  T
Q  499 aattctttaac 509  Q
    ||||| |||||    
T  50662531 aattccttaac 50662541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 29793553 - 29793438
Alignment:
Q  383 ggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaata 482  Q
    |||| |||| ||| |||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||| |    
T  29793553 ggcattagttaaggtgctaaaaataaaaagaaaagtcaaattttacattaaaaagaacacttttttaacttttaaaaagtaaaatacacaatttccaaga 29793454  T
Q  483 taatatttcattttat 498  Q
     ||| |||| ||||||    
T  29793453 caatgtttctttttat 29793438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 502
Target Start/End: Complemental strand, 38833069 - 38832964
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataaca--cttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcatttt 496  Q
    |||||| || |||||||||| ||||||| ||||||||| ||||  ||||||||||||| ||||||||||||||| ||||| ||||| |||||||| ||||    
T  38833069 ctaaaaataaaaagaaaagttaaattttgcattgaaaagaacatacttttttaactttcaaaaagtagaatacataattttcaatacaatatttcctttt 38832970  T
Q  497 ataatt 502  Q
    ||||||    
T  38832969 ataatt 38832964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 27659710 - 27659822
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||| ||||||||||| ||||| |||||| || ||||||| ||||||| |||||| ||||| ||||||||| ||||| ||| | | |||||||||||||    
T  27659710 ctaaatgtagaaagaaaggtcaagttttacgttaaaaataatactttttcaactttcaaaaaatagaatacacaattttcaaaaaattatttcattttat 27659809  T
Q  499 aattctttaacaa 511  Q
    ||||| |||||||    
T  27659810 aattcattaacaa 27659822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 52763063 - 52762955
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataa 500  Q
    ||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||| || |||||||||||| ||||||| | | || ||||| ||||||||    
T  52763063 aaaagtagaaagaaaagtcaagttttgcattgaaaagaactcttttttaactttcaagaagtagaatacataatttccgacacaaaatttctttttataa 52762964  T
Q  501 ttctttaac 509  Q
     || |||||    
T  52762963 ctccttaac 52762955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 413 - 508
Target Start/End: Original strand, 9099140 - 9099237
Alignment:
Q  413 aaaagtcaaattttacattgaaaataa--cacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    |||||||||||||| |||| |||| ||  ||||||||||||||| ||||||| |||||||  |||||||||| |||||||| ||||||||||| ||||    
T  9099140 aaaagtcaaattttgcattaaaaaaaaaacacttttttaactttcaaaaagttgaatacacgatttccaatacaatatttccttttataattccttaa 9099237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 31977216 - 31977328
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacactttttt--aacttttaaaaagtagaatacaaaatttccaatataatatttcatttt 496  Q
    |||| ||||||||||||||||||||||| |||| |||| |||| ||||||  |||| ||||||||||||||||| |||||| |  | || ||||| ||||    
T  31977216 ctaatagtagaaagaaaagtcaaattttgcattaaaaaaaacatttttttttaactattaaaaagtagaatacacaatttctaggacaaaatttcctttt 31977315  T
Q  497 ataattctttaac 509  Q
    ||||||| |||||    
T  31977316 ataattcattaac 31977328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 399 - 490
Target Start/End: Original strand, 46476452 - 46476544
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttt-taaaaagtagaatacaaaatttccaatataatattt 490  Q
    ||||||||| ||||| ||||||||||||||||| |||| ||||||||||| |||||  ||||||||||||||| ||||| ||| | |||||||    
T  46476452 ctaaaagtaaaaagataagtcaaattttacattaaaaagaacactttttttactttcaaaaaagtagaatacataattttcaagagaatattt 46476544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 413 - 508
Target Start/End: Original strand, 23089266 - 23089361
Alignment:
Q  413 aaaagtcaaattttacattgaaaataacact-tttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||||||||| |||||| |||||| || | || ||||  ||||||||||||||||    
T  23089266 aaaagtcaaattttacattaaaaa-aatactatttttaacttttaaaaagtataatacacaatttctaaaacaaaattttcttttataattctttaa 23089361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 32497784 - 32497896
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||| | |||||||||  |||| ||| |||||||||||||| ||||| |||||| |||||||| |||||| ||||| | | |||||||||  ||||||    
T  32497784 ctaaaaatggaaagaaaatacaaaatttgcattgaaaataacattttttaaactttcaaaaagtataatacacaattttcgagataatatttacttttat 32497883  T
Q  499 aattctttaacaa 511  Q
    ||||  |||||||    
T  32497884 aatttcttaacaa 32497896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 36754840 - 36754730
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||| |||||||| |||| |||| | ||||||| ||||||||||||||||| || |  || |||| | |||||| |||| ||| |||  ||||||    
T  36754840 ctaaaagtaaaaagaaaactcaagttttgcgttgaaaagaacacttttttaactttaaatagatataatatacaatttctaatacaatgttttcttttat 36754741  T
Q  499 aattctttaac 509  Q
    |||||||||||    
T  36754740 aattctttaac 36754730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 51459868 - 51459790
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataac-acttttttaacttttaaaaagtagaatacaaaattt 476  Q
    ||||||||| |||||||||| || |||| ||||||||| ||  | |||||||||||||||||||||||||||| |||||    
T  51459868 ctaaaagtataaagaaaagtaaagttttgcattgaaaaaaaataattttttaacttttaaaaagtagaatacacaattt 51459790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 512
Target Start/End: Original strand, 51490203 - 51490277
Alignment:
Q  438 aacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaaa 512  Q
    ||||||||||||||||| |||| ||| |||||||||||| ||| | |||||||  ||||||||||| ||||||||    
T  51490203 aacacttttttaactttcaaaaggtataatacaaaattttcaagagaatattttcttttataattccttaacaaa 51490277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 413 - 508
Target Start/End: Complemental strand, 23086539 - 23086444
Alignment:
Q  413 aaaagtcaaattttacattgaaaataacact-tttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaa 508  Q
    ||||||||||||||| |||||||| || | | |||||||||||||||||||| |||||| |||||| || | |||||||  ||||||||||| ||||    
T  23086539 aaaagtcaaattttatattgaaaa-aatattatttttaacttttaaaaagtataatacacaatttctaaaacaatatttttttttataattccttaa 23086444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 34664330 - 34664271
Alignment:
Q  443 ttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataatt 502  Q
    ||||| |||||||||||| ||||||||| ||||||||||| |||||||| | ||||||||    
T  34664330 tttttcaacttttaaaaaatagaatacataatttccaataaaatatttcctattataatt 34664271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 499
Target Start/End: Complemental strand, 277674 - 277548
Alignment:
Q  373 gtgtctccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaa 472  Q
    ||||||||||| ||||||| || |  ||||||  |||||||||||| |||||||  ||| |||| |||||||| | |||||| ||||| || ||| || |    
T  277674 gtgtctccgggacactagttaacaaactaaaaacagaaagaaaagtaaaattttgtattaaaaagaacactttctcaactttcaaaaactataatgcaca 277575  T
Q  473 atttccaatataatatttcattttata 499  Q
    |||| ||| | |||||||| |||||||    
T  277574 attttcaaaagaatatttccttttata 277548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 39149243 - 39149166
Alignment:
Q  400 taaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttc 477  Q
    ||||||||||||||||||  |   ||| |||||||||||||| | ||| |||||||||||| ||||||||| ||||||    
T  39149243 taaaagtagaaagaaaagatatgatttgcattgaaaataacaatatttcaacttttaaaaaatagaatacacaatttc 39149166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 49980365 - 49980313
Alignment:
Q  459 aagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    |||||||||||| ||||||||| |||||||||| ||| ||||||| |||||||    
T  49980365 aagtagaatacacaatttccaagataatatttcctttcataattccttaacaa 49980313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 11045910 - 11045959
Alignment:
Q  433 aaaataacacttttttaacttttaaaaagtagaatacaaaatttccaata 482  Q
    ||||||| ||||||| |||||||||||||| || |||| |||||||||||    
T  11045910 aaaataaaactttttcaacttttaaaaagttgattacacaatttccaata 11045959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 509
Target Start/End: Original strand, 55142341 - 55142406
Alignment:
Q  444 tttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    ||||||| ||| ||||  ||||||||| ||||||||| | |||||||  |||||||||||||||||    
T  55142341 tttttaaatttcaaaacatagaatacacaatttccaaaaaaatattttcttttataattctttaac 55142406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 371 - 508
Target Start/End: Complemental strand, 31330659 - 31330522
Alignment:
Q  371 cagtgtctccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaataca 470  Q
    ||||||||| ||||||||||| |||   |||||| |||||||||||||||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||    
T  31330659 cagtgtctctggggcactagttaaggaactaaaaatagaaagaaaagtcaagttttatattaaaaagaacacttttttaactttcaaaaagtagaataca 31330560  T
Q  471 aaatttccaatataatatttcattttataattctttaa 508  Q
     ||||| ||| | || ||||| | ||||||||||||||    
T  31330559 caattttcaagacaaaatttcctcttataattctttaa 31330522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 406 - 501
Target Start/End: Original strand, 30533672 - 30533768
Alignment:
Q  406 tagaaagaaaagtcaaattttacattgaaaataacactttttt-aacttttaaaaagtagaatacaaaatttccaatataatatttcattttataat 501  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||| |||  ||| ||||| |||||||||    
T  30533672 tagaaagaaaagacaaattttacattgaaaataactcttttttcaactttcaaaaagtagaatacacaattttcaagttaacatttccttttataat 30533768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 9245944 - 9246021
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaattt 476  Q
    |||||||||||||  |||||||| ||||  |||||||||||||||||||||||||| |||||||||||| || |||||    
T  9245944 ctaaaagtagaaaataaagtcaatttttgtattgaaaataacacttttttaactttcaaaaagtagaatgcacaattt 9246021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 491
Target Start/End: Complemental strand, 11393771 - 11393684
Alignment:
Q  404 agtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttc 491  Q
    ||||||||||||| |||| |||| ||| ||||| ||||||||||||||||| ||||| || |||||  ||||||||| | ||||||||    
T  11393771 agtagaaagaaaactcaagttttgcatcgaaaagaacacttttttaactttcaaaaaataaaatacccaatttccaagacaatatttc 11393684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 511
Target Start/End: Complemental strand, 29608536 - 29608449
Alignment:
Q  424 tttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    ||||||||||||| |||| | |||||||||||||||| ||||||||| ||||||||| |  ||||||| |||| |||||  |||||||    
T  29608536 tttacattgaaaagaacaatattttaacttttaaaaaatagaatacataatttccaaaaatatatttccttttttaatttcttaacaa 29608449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 2656480 - 2656431
Alignment:
Q  460 agtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    ||||||||||| |||||||||||||||||||  ||||||||||| |||||    
T  2656480 agtagaatacacaatttccaatataatattttcttttataattccttaac 2656431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 2667457 - 2667396
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaa 460  Q
    |||||| ||||||||||| | || |||| ||||||||| ||||||||||||||||| |||||    
T  2667457 ctaaaaatagaaagaaaatttaagttttgcattgaaaagaacacttttttaactttaaaaaa 2667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 511
Target Start/End: Original strand, 2158096 - 2158177
Alignment:
Q  430 ttgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaacaa 511  Q
    ||||||| ||||||||||| |||||||||||||| ||||||   |||  || || ||||||  |||||||||| ||||||||    
T  2158096 ttgaaaagaacacttttttcacttttaaaaagtacaatacatggtttttaaaatcatattttcttttataattgtttaacaa 2158177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 2667135 - 2667086
Alignment:
Q  460 agtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    ||||||||||| ||||||||||| |||||||  ||||||||||| |||||    
T  2667135 agtagaatacacaatttccaatacaatattttcttttataattccttaac 2667086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 185450 - 185560
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||||||||||||||| ||||||| ||||||||| | ||||||| ||| ||| ||||||||||||||| ||||| ||||| |||||||  ||||||    
T  185450 ctaaaagtagaaagaaaagttaaattttgcattgaaaagatcacttttctaattttcaaaaagtagaatacacaattttcaatacaatattttcttttat 185549  T
Q  499 aattctttaac 509  Q
    ||||| |||||    
T  185550 aattccttaac 185560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 401 - 509
Target Start/End: Complemental strand, 45879222 - 45879114
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataa 500  Q
    ||||||||||||||||||||| ||||  |||||||| ||||| |||||| |||| ||||||||||||||| ||||||||| | || ||||| ||||||||    
T  45879222 aaaagtagaaagaaaagtcaagttttgtattgaaaaaaacacatttttacctttcaaaaagtagaatacacaatttccaagacaaaatttccttttataa 45879123  T
Q  501 ttctttaac 509  Q
    ||| |||||    
T  45879122 ttccttaac 45879114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 28359798 - 28359734
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagta 463  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  28359798 ctaaaagtagaaagaaaagtcaaattttgcattgaaaatatcacttttttaactttcaaaaagta 28359734  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 6221049 - 6221158
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    |||||||| |||||||||||||||||||  |||||||| || |||||| ||||||| ||||||||||||| | ||||||||| | ||||| || ||||||    
T  6221049 ctaaaagtggaaagaaaagtcaaattttttattgaaaagaatactttt-taactttcaaaaagtagaatatacaatttccaagacaatatctccttttat 6221147  T
Q  499 aattctttaac 509  Q
    ||||| |||||    
T  6221148 aattccttaac 6221158  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 9047206 - 9047097
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||| |||||| || ||||||||| |||| ||||||||||||||||| |||||||||||| || ||||| ||||| || ||||| ||||||    
T  9047206 ctaaaagtagaaataaaagttaagttttacattaaaaa-aacacttttttaactttcaaaaagtagaatccacaattttcaatacaaaatttccttttat 9047108  T
Q  499 aattctttaac 509  Q
     |||| |||||    
T  9047107 gattccttaac 9047097  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 512
Target Start/End: Original strand, 34224272 - 34224385
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||||||||||| ||| ||||| |||| |||| ||||||||||||||| |||||| ||||||||||||| | ||||| ||| | |||| |||  |||||    
T  34224272 ctaaaagtagaaataaatgtcaacttttgcattaaaaataacactttttcaactttgaaaaagtagaatatacaattttcaagagaataattccatttat 34224371  T
Q  499 aattctttaacaaa 512  Q
    ||||| ||||||||    
T  34224372 aattccttaacaaa 34224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 511
Target Start/End: Original strand, 30898032 - 30898161
Alignment:
Q  382 gggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaat 481  Q
    |||||||||| |||   |||||||||||||  |||||||| |||| ||||| ||| ||||  ||||||||||| ||||||||||||  | | ||| |||     
T  30898032 gggcactagttaaggaactaaaagtagaaaataaagtcaagttttgcattggaaagaacatctttttaactttcaaaaagtagaatgtacagttttcaag 30898131  T
Q  482 ataatatttcattttataattctttaacaa 511  Q
    | |||||||| ||||||||||| |||||||    
T  30898132 aaaatatttccttttataattccttaacaa 30898161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 509
Target Start/End: Complemental strand, 30198401 - 30198320
Alignment:
Q  428 cattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataattctttaac 509  Q
    |||||||||| ||| | ||| |||||||||||| ||||||||| |||||| || | |||||||| |||| |||||| |||||    
T  30198401 cattgaaaatgacaatatttcaacttttaaaaaatagaatacacaatttctaagaaaatatttccttttctaattccttaac 30198320  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 40417641 - 40417751
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||| |||||||||||||||||||||| ||||||   |     |||||||||||| ||||| ||||| ||| ||||||||| | |||||||  ||||||    
T  40417641 ctaaatgtagaaagaaaagtcaaattttgcattgattttttt--ttttttaactttcaaaaaatagaaaacacaatttccaaaacaatattttcttttat 40417738  T
Q  499 aattctttaacaa 511  Q
    ||||| |||||||    
T  40417739 aattccttaacaa 40417751  T

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Target: scaffold0191 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 508
Target Start/End: Complemental strand, 4674 - 4544
Alignment:
Q  378 tccggggcactagtaaagatgctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttc 477  Q
    |||||| ||||||| |||   ||||||||||||||||||||||| || |  ||| |||| |||| ||| |||||||| ||||||| ||||||| |||||     
T  4674 tccgggacactagttaaggaactaaaagtagaaagaaaagtcaagttctgtattaaaaagaacattttattaactttcaaaaagtggaatacacaatttt 4575  T
Q  478 caatataatatttcattttataattctttaa 508  Q
    ||||| ||||||||||||||| |||||||||    
T  4574 caatacaatatttcattttattattctttaa 4544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 140264 - 140372
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataa 500  Q
    |||||||||||| |||||||| ||||  |||||||| ||   |||||||||||| ||||| ||||||||| ||||| ||| |||| ||||||||||||||    
T  140264 aaaagtagaaaggaaagtcaagttttgtattgaaaaaaaattttttttaactttcaaaaaatagaatacataattttcaagataaaatttcattttataa 140363  T
Q  501 ttctttaac 509  Q
    ||| |||||    
T  140364 ttccttaac 140372  T

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Target: scaffold1095 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 508
Target Start/End: Original strand, 873 - 982
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacact--tttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttat 498  Q
    ||||| ||||||||||||||||||||  |||||||||||| ||  ||||||||||| ||| |||||| ||||  |||| ||| | || ||||| ||||||    
T  873 aaaaggagaaagaaaagtcaaattttggattgaaaataactcttatttttaactttcaaacagtagactacaccattttcaaaacaaaatttccttttat 972  T
Q  499 aattctttaa 508  Q
    ||||| ||||    
T  973 aattccttaa 982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 489
Target Start/End: Complemental strand, 18936 - 18845
Alignment:
Q  399 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacactttttt--aacttttaaaaagtagaatacaaaatttccaatataatatt 489  Q
    ||||||||| ||||||| |||||||||| |||| |||| |||| ||||||  |||||| ||||||||||||||| ||||| ||| | ||||||    
T  18936 ctaaaagtaaaaagaaa-gtcaaattttgcattaaaaagaacattttttttcaactttcaaaaagtagaatacataattttcaagacaatatt 18845  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 486 - 415
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacact--tttttaacttttaaaaagtagaataca 470  Q
    ||||| ||||||||||||||||||||  |||||||||||| ||  ||||||||||| ||| |||||| ||||    
T  486 aaaaggagaaagaaaagtcaaattttggattgaaaataactcttatttttaactttcaaacagtagactaca 415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 508
Target Start/End: Complemental strand, 1035 - 928
Alignment:
Q  401 aaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaagtagaatacaaaatttccaatataatatttcattttataa 500  Q
    ||||||||||||||||  |||| |  ||||| |||  ||||  |||| || ||| |||||||| |||||| ||||| ||| | |||||||| ||||||||    
T  1035 aaaagtagaaagaaaaaacaaaatcaacattaaaagcaacatcttttcaagtttgaaaaagtaaaatacataattttcaagaaaatatttccttttataa 936  T
Q  501 ttctttaa 508  Q
    ||||||||    
T  935 ttctttaa 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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