View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_high_23 (Length: 273)
Name: NF19185_high_23
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 55943014 - 55943258
Alignment:
| Q |
20 |
ttaatcatccatgttaccttccaaataccatgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgcta |
119 |
Q |
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| T |
55943014 |
ttaatcatccatgttaccttccaaataccatgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgcta |
55943113 |
T |
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| Q |
120 |
tttcaactctgctgcaataaccagtgatctcgatccaagtaaataatctctcataattcatcttaaaagctatcaattttgatgctttatcctttcattt |
219 |
Q |
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| T |
55943114 |
tttcaactctgctgcaataaccagtgatctcgatccaagtaaataatctctcataattcatcttaaaagctatcaatttttatgctttatcctttcattt |
55943213 |
T |
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| Q |
220 |
atttacatatagtaacaattaggaagatacattgaatacctatgc |
264 |
Q |
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| T |
55943214 |
atttacatatagtaacaattagtaagatacattgaatacctatgc |
55943258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 55946387 - 55946527
Alignment:
| Q |
31 |
tgttaccttccaaataccatgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctatttcaactctg |
130 |
Q |
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| T |
55946387 |
tgttaccttccaaatactgtgaaggatcatgcttcctatgccttcaacgattactatcagaagtacaagcacaagggaggctcttgctatttcaactatg |
55946486 |
T |
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| Q |
131 |
ctgcaataaccagtgatctcgatccaagtaaataatctctc |
171 |
Q |
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| T |
55946487 |
ctgcaataacaagtgcttctgacccaagtaaattatctctc |
55946527 |
T |
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