View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19185_high_31 (Length: 238)

Name: NF19185_high_31
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19185_high_31
NF19185_high_31
[»] chr6 (1 HSPs)
chr6 (171-221)||(5976259-5976309)
[»] chr3 (4 HSPs)
chr3 (150-207)||(37486043-37486100)
chr3 (21-55)||(54428864-54428898)
chr3 (21-58)||(23456827-23456864)
chr3 (21-57)||(37127805-37127841)
[»] chr8 (2 HSPs)
chr8 (21-59)||(15231356-15231394)
chr8 (21-55)||(29265592-29265626)
[»] chr4 (1 HSPs)
chr4 (23-58)||(31999096-31999131)
[»] chr1 (1 HSPs)
chr1 (21-55)||(38261172-38261206)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 5976259 - 5976309
Alignment:
Q  171 ttgtgaagaggaatctattataaagagaagcgattttggtgtattcacgaa 221  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5976259 ttgtgaagaggaatcgattataaagagaagcgattttggtgtattcacgaa 5976309  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 37486100 - 37486043
Alignment:
Q  150 tttctcattcttgttcagttgttgtgaagaggaatctattataaagagaagcgatttt 207  Q
    |||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||    
T  37486100 tttctcattcttgttcagttgttgtgaagaggaatcgattatgagaagaagcgatttt 37486043  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 54428864 - 54428898
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtt 55  Q
    ||||||||||| |||||||||||||||||||||||    
T  54428864 ggtacacctcattttatgagtgtacagtagaagtt 54428898  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 23456827 - 23456864
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtttcc 58  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  23456827 ggtacacctcactttgtgagtgtaccgtagaagtttcc 23456864  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 37127841 - 37127805
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtttc 57  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  37127841 ggtacacctcattttatgagtgtaccgtagaagtttc 37127805  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 15231356 - 15231394
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtttcct 59  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  15231356 ggtacacctcactttatgagtgtaccgtagaagtttcct 15231394  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 29265626 - 29265592
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtt 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  29265626 ggtacacctcactttgtgagtgtacagtagaagtt 29265592  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 31999096 - 31999131
Alignment:
Q  23 tacacctcactttatgagtgtacagtagaagtttcc 58  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31999096 tacacctcactttatgagtgtaccgtagaagtttcc 31999131  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 38261172 - 38261206
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtt 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  38261172 ggtacacctcactttatgagtgtaccgtagaagtt 38261206  T

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