View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_high_6 (Length: 407)
Name: NF19185_high_6
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 12561186 - 12561444
Alignment:
| Q |
1 |
ttgttaacaactattctgttttctattatattttgattcttatcttaattcccttgatat--atagtgactagcagtagctggtgagtgagtgcattatg |
98 |
Q |
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| T |
12561186 |
ttgttaacaactattctgttttctattatattttgattcttatcttaatttcctagatatatatagtgactagcagaagctagtgagtgagtgcattatg |
12561285 |
T |
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| Q |
99 |
gattcatatataatcgtacacattaaattaaaaaataatataaaggtgtgtgcataattgattccccacaatataccccaatccttcttcatttttcaat |
198 |
Q |
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| T |
12561286 |
gattcatatataatcgtacacattaaattaaaaaataatataaaggtgtttgcataattgattccccacaatataccccaatccttcttcatttttcaat |
12561385 |
T |
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| Q |
199 |
ttcttatttagaaacgttatgaatttttaagagaataatttgatgcagaatgaaatttat |
258 |
Q |
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| T |
12561386 |
ttctta-ttagaaacgttatgaattcttaagagaataatttgatgcagaatgaaatttat |
12561444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 12561439 - 12561551
Alignment:
| Q |
283 |
atttatatgattgtgataagatgaaagtcgaannnnnnnaaaatcaaacaattaagattgaatgaaagtcaaactttttataacttaact-ctgtatata |
381 |
Q |
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| T |
12561439 |
atttatatgattgcgataagatgaaagtcgaacttttttaaaatcaaacaattaagattgaataaaagtcgaactttttataacttgactcctgcatata |
12561538 |
T |
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| Q |
382 |
acaatgcatgtct |
394 |
Q |
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| T |
12561539 |
acaatgcatgtct |
12561551 |
T |
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