View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_low_1 (Length: 1135)
Name: NF19185_low_1
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 1061; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1061; E-Value: 0
Query Start/End: Original strand, 29 - 1124
Target Start/End: Complemental strand, 29333961 - 29332863
Alignment:
| Q |
29 |
cattaaccctatataataagagaaaaacccttcttcacaaattacaatactgccactgtctttcttctaaaattcaacagaaaagctgacgtggaacgcc |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333961 |
cattaaccctatataataagagaaaaacccttcttcacaaattacaatactgccactgtctttcttctaaaattcaacagaaaagctgacgtggaacgcc |
29333862 |
T |
|
| Q |
129 |
gccataacagaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccacttccgcctccgtcacatctccgccaccgccgcc---acc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |
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| T |
29333861 |
gccataacagaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccacttccgcctccgtcacctctccaccaccgccgccgccacc |
29333762 |
T |
|
| Q |
226 |
tccaccactagaatcttcacttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatc |
325 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333761 |
tccaccgctagaatcttcccttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatc |
29333662 |
T |
|
| Q |
326 |
gaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaagtaa |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29333661 |
gaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgcaacgattcttcaatccaacgatctttcatcgcttcaagaagtaa |
29333562 |
T |
|
| Q |
426 |
tcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagct |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333561 |
tcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagct |
29333462 |
T |
|
| Q |
526 |
tctagaatttcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatc |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333461 |
tctagaatttcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatc |
29333362 |
T |
|
| Q |
626 |
ttactcgaactgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgata |
725 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333361 |
ttactcgaactgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgata |
29333262 |
T |
|
| Q |
726 |
ggttttaccggtgttctcttggtggttgggtggagcttcttgagtatgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaagggctttt |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333261 |
ggttttaccggtgttctcttggtggttgggtggagcttcttgagtatgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaagggctttt |
29333162 |
T |
|
| Q |
826 |
gttgttaacggtaataccggtggatgttgcgaatgagagagcattttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggact |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333161 |
gttgttaacggtaataccggtggatgttgcgaatgagagagcattttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggact |
29333062 |
T |
|
| Q |
926 |
tatcgggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgt |
1025 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29333061 |
tatcgggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgt |
29332962 |
T |
|
| Q |
1026 |
tgccgaatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
1124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29332961 |
tgccgaatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
29332863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 931 - 1069
Target Start/End: Complemental strand, 29321862 - 29321724
Alignment:
| Q |
931 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
1030 |
Q |
| |
|
|||| |||||||||| | |||||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||| |||| |||| |||| |||||| |
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| T |
29321862 |
ggatcaggaattgaaagcattggcattcactgcatcactttcgttgatgttattgtcgaaggatcttcagagaacagacgtatacgatattctcttgccg |
29321763 |
T |
|
| Q |
1031 |
aatttgttgagtattatcgatgaacatggggaagaagag |
1069 |
Q |
| |
|
| |||||||| ||||||| || ||||||| ||||||||| |
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|
| T |
29321762 |
attttgttgaatattatcaatcaacatggagaagaagag |
29321724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 322 - 505
Target Start/End: Complemental strand, 29305285 - 29305102
Alignment:
| Q |
322 |
catcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaa |
421 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||| | |||| | ||||||||| || || | | | |||||| |
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|
| T |
29305285 |
catcgaagaaaaccaagacagatcactcatccacggcttcgaacttcgacaacacgccgaaaggtttctcctatccaacgacctctcgtcgttgcaagaa |
29305186 |
T |
|
| Q |
422 |
gtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattc |
505 |
Q |
| |
|
| |||||| || ||| | | ||| | | |||| |||||||| ||||||||||| ||| ||| |||||| |||||||||||| |
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|
| T |
29305185 |
gcaatcgatgaatactctcaaaccaggaatcaatctttattcacgattttcaaatctttcacacttcattatcctaacgcattc |
29305102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 263 - 377
Target Start/End: Complemental strand, 29322533 - 29322419
Alignment:
| Q |
263 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcg |
362 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| ||| || |
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|
| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatccacggcctcc |
29322434 |
T |
|
| Q |
363 |
aacttcaacaacacg |
377 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29322433 |
aacttcaagaacacg |
29322419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 931 - 1121
Target Start/End: Complemental strand, 29304676 - 29304486
Alignment:
| Q |
931 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
1030 |
Q |
| |
|
|||| |||||||||||| | |||||||| || |||||||||| ||||| |||||||| | || || || || || |||| | ||| ||| |||| | |
|
|
| T |
29304676 |
ggatcaggaattgaaggcactggcatacgattcatcaatttcattgatattattgtcaaatgattttctgaaaaatgaagtatccaattctctcttgcgg |
29304577 |
T |
|
| Q |
1031 |
aatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatg |
1121 |
Q |
| |
|
||||| |||| ||| |||||| |||| || |||||||||||| ||||| ||||| |||| |||||| | || ||||||| |||||||||| |
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|
| T |
29304576 |
aatttattgaatatcatcgatcaacacggagaagaagaggttctggtgaataggattaatcgtttgtgggaattagttaaattggatgatg |
29304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 654 - 737
Target Start/End: Complemental strand, 29322142 - 29322059
Alignment:
| Q |
654 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
737 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
|
|
| T |
29322142 |
attcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
29322059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 468 - 532
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
468 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
532 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
|
|
| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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