View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_low_13 (Length: 337)
Name: NF19185_low_13
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 26152440 - 26152636
Alignment:
| Q |
1 |
gttggcttccatgacttccattttgcttggatatggtaaataattactatacaccatctcatatttatagtttattttatttattatactcctatccaaa |
100 |
Q |
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| T |
26152440 |
gttggcttccatgacttccattttgcttggatatggtaaataattactatacaccatctcatatttatagtttattt-atttattatactcctatccaaa |
26152538 |
T |
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| Q |
101 |
ttttcttcaaagagaaataagtatgcttttgcttgtgctatattatctttttaacggtaaatattagtacgttaattgttatgttattattttcttta |
198 |
Q |
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| T |
26152539 |
ttttcttcaaaaagaaacaagtatgcttttgcttgtgctatattgttttattaatggtaaatattagtacgttaattgttacgttacttttttcttta |
26152636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26152300 - 26152439
Alignment:
| Q |
1 |
gttggcttccatgacttccattttgcttggatatggtaaataattactatacaccatctcatatttatagtttattttatttattatactcctatccaaa |
100 |
Q |
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| T |
26152300 |
gttggcttccatgacttccattttgcttggatatggtaaataattactatacaccatctcatatttatagttta-tttatttattatactcctatccaaa |
26152398 |
T |
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| Q |
101 |
ttttcttcaaagagaaataagtatgcttttgcttgtgctat |
141 |
Q |
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| T |
26152399 |
ttttcttcaaaaagaaacaagtatgcttttgcttgtgctat |
26152439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 26152669 - 26152812
Alignment:
| Q |
198 |
atgaaagaaaaatgttgatttttgacac--gtcatcat--tacagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
293 |
Q |
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||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152669 |
atgaatgaaaaatgttgatttttgacatatgtcatcatgttatagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
26152768 |
T |
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| Q |
294 |
cgacgggaaaattgaggtcttattaggaattatcaacatctact |
337 |
Q |
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| T |
26152769 |
cgacgggaaaattgaggtcttattaggaattatcaacatctact |
26152812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 27318766 - 27318839
Alignment:
| Q |
235 |
acagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatccgacgggaaaattga |
308 |
Q |
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| T |
27318766 |
acagatattggtgtgatgagtggagcagccatctatataaaaagagaccttaaagtaacagacgtgcaaattga |
27318839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 141
Target Start/End: Original strand, 26152268 - 26152299
Alignment:
| Q |
110 |
aagagaaataagtatgcttttgcttgtgctat |
141 |
Q |
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| T |
26152268 |
aagagaaataagtatgcttttgcttgtgctat |
26152299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 24040396 - 24040356
Alignment:
| Q |
148 |
tttttaacggtaaatattagtacgttaattgttatgttatt |
188 |
Q |
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| T |
24040396 |
tttttaacggtaaatgttagtaagttaattgttacgttatt |
24040356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 35478496 - 35478530
Alignment:
| Q |
159 |
aaatattagtacgttaattgttatgttattatttt |
193 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
35478496 |
aaatattaatacgttaattgttatgttattatttt |
35478530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 54347849 - 54347886
Alignment:
| Q |
2 |
ttggcttccatgacttccattttgcttggatatggtaa |
39 |
Q |
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| T |
54347849 |
ttggcttccatgacttccattttacttggttatggtaa |
54347886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 54348009 - 54348066
Alignment:
| Q |
236 |
cagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
293 |
Q |
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|||||||||| || ||||||||||||| || ||||||||||||||||| ||| |||| |
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| T |
54348009 |
cagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatc |
54348066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 31496805 - 31496857
Alignment:
| Q |
143 |
ttatctttttaacggtaaatattagtacgttaattgttatgttattattttct |
195 |
Q |
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|||| |||||||||| ||||||||||| ||| ||||||||||| |||||||| |
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| T |
31496805 |
ttatttttttaacggaaaatattagtatgttggttgttatgttagtattttct |
31496857 |
T |
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