View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_low_16 (Length: 314)
Name: NF19185_low_16
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 25813495 - 25813200
Alignment:
| Q |
2 |
agagaccttaaacaagtactacaaggctggttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaa |
101 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813495 |
agagaccataaacaagtactacaaggctggttacgacgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaa |
25813396 |
T |
|
| Q |
102 |
cccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctc |
201 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25813395 |
cccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgtttgaaaacatgtctgctc |
25813296 |
T |
|
| Q |
202 |
aacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813295 |
aacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaa |
25813200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 25788576 - 25788280
Alignment:
| Q |
2 |
agagaccttaaacaagtactacaaggctggttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaa |
101 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25788576 |
agagaccataaacaagtactacaaggctggttactacgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaagaccctcagaa |
25788477 |
T |
|
| Q |
102 |
cccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctc |
201 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25788476 |
cccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacattttcgatgattcgtttgaaaacatgtctgctc |
25788377 |
T |
|
| Q |
202 |
aacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaat |
298 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
25788376 |
aacagaacattgattttatttacaataatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcttcggtaaatcttaaat |
25788280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 25759179 - 25759480
Alignment:
| Q |
2 |
agagaccttaaacaagtactacaag-----gctggttacgacgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccct |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25759179 |
agagaccttaaacaagtactacaagctaaggctggttacggcgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccct |
25759278 |
T |
|
| Q |
97 |
cagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtc |
196 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
25759279 |
cagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcaatgatttgtttgaaaacatgat |
25759378 |
T |
|
| Q |
197 |
tgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaa |
296 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25759379 |
tgctcaacaaaacattgtttttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaa |
25759478 |
T |
|
| Q |
297 |
at |
298 |
Q |
| |
|
|| |
|
|
| T |
25759479 |
at |
25759480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 25862864 - 25862694
Alignment:
| Q |
117 |
cctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgatt |
216 |
Q |
| |
|
|||||||| ||||| |||||| | || || |||||||| |||||||||| |||||| | ||| |||| ||||||| || |||||| || ||||||| |
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| T |
25862864 |
cctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatattgatt |
25862765 |
T |
|
| Q |
217 |
ttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
287 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
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| T |
25862764 |
atatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
25862694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 12405522 - 12405263
Alignment:
| Q |
38 |
cgcggtgtgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatg |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12405522 |
cgcggtgcgtaaacactccaccactacctatgtggttatgtcaaataggctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatg |
12405423 |
T |
|
| Q |
138 |
aggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcat |
237 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12405422 |
aggtctgtaattgatgttcactactacaacatctttgatgattcgtttgaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcat |
12405323 |
T |
|
| Q |
238 |
cggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaa |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12405322 |
cggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaagtcttaaa |
12405263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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