View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19185_low_22 (Length: 285)
Name: NF19185_low_22
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 4567686 - 4567950
Alignment:
| Q |
1 |
tcgactttcgcctcacatggttgtaacttcacaaatccgattttattgaacgtagataatgttatcaggttgaaactggatcctaagtcacatttgctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4567686 |
tcgactttcgcctcacatggttgtaacttcacaaatccgattttattgaacgtagataatgttatcaggttgaaactggatcctaagtcacatttgctct |
4567785 |
T |
|
| Q |
101 |
atctatttaaacatcaccaatgtaaactataatattgaagcaaccaggaacctctaacttttaggggaggtttccttttaaaaatcacacgacaattctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4567786 |
atctatttaaacatcaccaatgtaaactataatattgaagcaaccaggaacctctaa-atttaggggaggtttccttttaaaaatcacatgaaaattct- |
4567883 |
T |
|
| Q |
201 |
ggttgtagaaaacaattcttcatcaaatgacatgactttcaacattagaatatctttaaggaatttta |
268 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4567884 |
-gttatagaaaacaattcttcatcaaatgacatgactttcaacattagaatatctttaaggaatttta |
4567950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University