View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19185_low_32 (Length: 238)

Name: NF19185_low_32
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19185_low_32
NF19185_low_32
[»] chr6 (1 HSPs)
chr6 (171-221)||(5976259-5976309)
[»] chr3 (4 HSPs)
chr3 (150-207)||(37486043-37486100)
chr3 (21-55)||(54428864-54428898)
chr3 (21-58)||(23456827-23456864)
chr3 (21-57)||(37127805-37127841)
[»] chr8 (2 HSPs)
chr8 (21-59)||(15231356-15231394)
chr8 (21-55)||(29265592-29265626)
[»] chr4 (1 HSPs)
chr4 (23-58)||(31999096-31999131)
[»] chr1 (1 HSPs)
chr1 (21-55)||(38261172-38261206)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 5976259 - 5976309
Alignment:
Q  171 ttgtgaagaggaatctattataaagagaagcgattttggtgtattcacgaa 221  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5976259 ttgtgaagaggaatcgattataaagagaagcgattttggtgtattcacgaa 5976309  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 37486100 - 37486043
Alignment:
Q  150 tttctcattcttgttcagttgttgtgaagaggaatctattataaagagaagcgatttt 207  Q
    |||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||    
T  37486100 tttctcattcttgttcagttgttgtgaagaggaatcgattatgagaagaagcgatttt 37486043  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 54428864 - 54428898
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtt 55  Q
    ||||||||||| |||||||||||||||||||||||    
T  54428864 ggtacacctcattttatgagtgtacagtagaagtt 54428898  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 23456827 - 23456864
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtttcc 58  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  23456827 ggtacacctcactttgtgagtgtaccgtagaagtttcc 23456864  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 37127841 - 37127805
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtttc 57  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  37127841 ggtacacctcattttatgagtgtaccgtagaagtttc 37127805  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 15231356 - 15231394
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtttcct 59  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  15231356 ggtacacctcactttatgagtgtaccgtagaagtttcct 15231394  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 29265626 - 29265592
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtt 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  29265626 ggtacacctcactttgtgagtgtacagtagaagtt 29265592  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 31999096 - 31999131
Alignment:
Q  23 tacacctcactttatgagtgtacagtagaagtttcc 58  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31999096 tacacctcactttatgagtgtaccgtagaagtttcc 31999131  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 38261172 - 38261206
Alignment:
Q  21 ggtacacctcactttatgagtgtacagtagaagtt 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  38261172 ggtacacctcactttatgagtgtaccgtagaagtt 38261206  T

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