View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19185_low_36 (Length: 227)

Name: NF19185_low_36
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19185_low_36
NF19185_low_36
[»] chr5 (8 HSPs)
chr5 (2-221)||(10563130-10563349)
chr5 (42-221)||(10765042-10765221)
chr5 (41-221)||(10748941-10749121)
chr5 (47-220)||(10742634-10742807)
chr5 (111-221)||(10609813-10609923)
chr5 (47-221)||(11049804-11049978)
chr5 (2-52)||(10764984-10765034)
chr5 (129-221)||(10548896-10548988)
[»] chr6 (4 HSPs)
chr6 (111-217)||(12930383-12930489)
chr6 (111-217)||(12956185-12956291)
chr6 (111-217)||(12905293-12905399)
chr6 (111-217)||(12897672-12897778)
[»] chr2 (2 HSPs)
chr2 (111-217)||(17925402-17925508)
chr2 (41-92)||(17925332-17925383)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 10563349 - 10563130
Alignment:
Q  2 atctcctcctaatttgttagaagcacacgtaaaacgcactaaggatgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaagg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563349 atctcctcctaatttgttagaagcacacgtaaaacgcactaaggatgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaagg 10563250  T
Q  102 tggaatgaatgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563249 tggaatgaatgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatg 10563150  T
Q  202 tcaagtttgtaggaatttct 221  Q
    ||||||||||||||||||||    
T  10563149 tcaagtttgtaggaatttct 10563130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 10765042 - 10765221
Alignment:
Q  42 aaggatgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaaggtggaatgaatgaagctttttcaaagagccaatttcaattg 141  Q
    ||||||||||| ||||  | ||||||||||||||||||| ||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||     
T  10765042 aaggatgaaagattcctgaaggatgaagggatccctccatttaaattgttaccgaaaagggcgaatgaatgaaggtttttcaaagagccaatttcaatta 10765141  T
Q  142 gtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttct 221  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  10765142 gtattttccctgtcaatttgttccctcccaaaatcaagtctatgagattggagcaatacgtcaagtttataggaatttct 10765221  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 10748941 - 10749121
Alignment:
Q  41 taaggatgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaaggtggaatgaatgaagctttttcaaagagccaatttcaatt 140  Q
    |||||||||||| ||||||||| ||||||| |  || |||||||||||||| ||  |||  |  | |   ||||||||||||||||||||||||||||||    
T  10748941 taaggatgaaagattccctatgaatgaaggaaatccaccagttaaattgtttccccaaacatttattagttgaagctttttcaaagagccaatttcaatt 10749040  T
Q  141 ggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttct 221  Q
    |||||||| |||||||  ||||||||||||| | | ||| || ||||||||||||||||||||||||||| ||||||||||    
T  10749041 ggtattttgccaatcacattgttccctcccacatttaagcctttgagattggagcaatatgtcaagtttgaaggaatttct 10749121  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 10742634 - 10742807
Alignment:
Q  47 tgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaaggtggaatgaatgaagctttttcaaagagccaatttcaattggtatt 146  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    |||     ||||| ||||| ||||||||| ||||||||||||||||||||    
T  10742634 tgaaagattccctatggatgaagagattcctccagttaaattgttattccaaacactcaatgattgaagttttttcaaatagccaatttcaattggtatt 10742733  T
Q  147 ttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttc 220  Q
    || |||||||| ||||||||| ||||| | | | || | ||||| |||||||||||||||||||||||||||||    
T  10742734 ttgccaatcaacttgttccctgccaaagttatgactttcagatttgagcaatatgtcaagtttgtaggaatttc 10742807  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 10609923 - 10609813
Alignment:
Q  111 tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg 210  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||   || ||| ||||||||||||||| ||||| |||||    
T  10609923 tgaagctttttcaaagagccaatttcaatcggtattttgccaatcaaattgtttcctcccaaacgtaactctttgagattggagcaatgtgtcaggtttg 10609824  T
Q  211 taggaatttct 221  Q
    |||||||||||    
T  10609823 taggaatttct 10609813  T

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Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 11049804 - 11049978
Alignment:
Q  47 tgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaaggtggaatgaatgaagctttttcaaagagccaatttcaattggtatt 146  Q
    |||||| ||||||||| |||||||||| ||||||||||| || ||     ||| |   ||||| ||||| ||||||||||||||||||||| |||||||     
T  11049804 tgaaagattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagccaatttcatttggtatc 11049903  T
Q  147 ttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttct 221  Q
    || ||||| || |||||||||||||||  ||||||| | ||||||||||||| ||| | ||||||||||||||||    
T  11049904 ttgccaattaaattgttccctcccaaatacaagtctttaagattggagcaatgtgtgaggtttgtaggaatttct 11049978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 10764984 - 10765034
Alignment:
Q  2 atctcctcctaatttgttagaagcacacgtaaaacgcactaaggatgaaag 52  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10764984 atctcctcctaatttgttagaagcacacgtaaaacgcattaaggatgaaag 10765034  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 10548988 - 10548896
Alignment:
Q  129 ccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttct 221  Q
    |||||||||||||||||||| |||||||| |||||||||| |||    |||| | | || ||| | |||| ||||||||||||||||||||||    
T  10548988 ccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttct 10548896  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 12930489 - 12930383
Alignment:
Q  111 tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg 210  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |  | ||||||   ||||  |||   | ||||||||||||||||||||| |||||    
T  12930489 tgaagctttttcaaagagccaatttcaattggtattttaccattgagatggttcccattcaaatacaataatttgagattggagcaatatgtcaggtttg 12930390  T
Q  211 taggaat 217  Q
    |||||||    
T  12930389 taggaat 12930383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 12956291 - 12956185
Alignment:
Q  111 tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg 210  Q
    |||||||||||||||||||| |||||| |||||||||| ||| | |  | ||||||   ||||| |||   | |||||||||||||||||||||||||||    
T  12956291 tgaagctttttcaaagagccgatttcagttggtattttaccattgagatggttcccattcaaaaacaataatttgagattggagcaatatgtcaagtttg 12956192  T
Q  211 taggaat 217  Q
    | |||||    
T  12956191 ttggaat 12956185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 12905399 - 12905293
Alignment:
Q  111 tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg 210  Q
    |||||||||||||||||||| |||||| |||||||||| ||||| |  | ||||||   ||||  |||     ||||||||||||||||||||| |||||    
T  12905399 tgaagctttttcaaagagccgatttcagttggtattttaccaatgagatggttcccattcaaatacaataacttgagattggagcaatatgtcaggtttg 12905300  T
Q  211 taggaat 217  Q
    |||||||    
T  12905299 taggaat 12905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 12897778 - 12897672
Alignment:
Q  111 tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg 210  Q
    |||||||||||||||||||| | |||| |||||||||| ||||| |  | ||||||   ||||  |||     ||||||||||||||||||||| |||||    
T  12897778 tgaagctttttcaaagagccgaattcagttggtattttaccaatgagatggttcccattcaaatacaataacttgagattggagcaatatgtcaggtttg 12897679  T
Q  211 taggaat 217  Q
    |||||||    
T  12897678 taggaat 12897672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 17925402 - 17925508
Alignment:
Q  111 tgaagctttttcaaagagccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttg 210  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||| |  | |||||| | ||||| |||   | ||||||| || |||||||||| |||||    
T  17925402 tgaagttttttcaaagagccgatttcagttggtattttaccaatgagatggttcccactcaaaaacaataatttgagattagaacaatatgtcaggtttg 17925501  T
Q  211 taggaat 217  Q
    |||||||    
T  17925502 taggaat 17925508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 17925332 - 17925383
Alignment:
Q  41 taaggatgaaaggttccctatggatgaagggatccctccagttaaattgtta 92  Q
    |||| ||||||| || |||||| |||||||||| ||||||||||||||||||    
T  17925332 taagcatgaaagatttcctatgaatgaagggattcctccagttaaattgtta 17925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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