View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19185_low_4 (Length: 473)
Name: NF19185_low_4
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 24 - 455
Target Start/End: Complemental strand, 12299657 - 12299226
Alignment:
| Q |
24 |
ataataccaaacatttccgacaaacaaatgatcttctacctctaggatttctagnnnnnnnnnnnnnnncaaagcaacacattccaacaacctttccctt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
12299657 |
ataataccaaacatttccgacaaacaaatgatcttatacctctaggatttctagacaccacacacacaccaaagcaacacattccaacaaccttcccctt |
12299558 |
T |
|
| Q |
124 |
ctagctaagtcgccacgagtaggaagcctctctttaagaatagttgtcaagataaattttgaatcttttctggtgcaaaacttgcccaaactcctctcaa |
223 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12299557 |
ctagccaagtcaccacgagtaggaagcctctctttaataatagttgtcaagataaaatttgaatcttttgtggtgcaaaacttgcccaaactcctctcaa |
12299458 |
T |
|
| Q |
224 |
tcttctccttattgtcgcattcaaatttgtgtttaatattcatatattcttatatgcaacgttaatgatctagtcatttgtcgaattaacaattgatcga |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12299457 |
tcttctccttattgtcgcattcaaatttgtgtttaatattcatatattcttatatgcaacgttaatgatctagtcatttgtcgaattaacaattgatcga |
12299358 |
T |
|
| Q |
324 |
aataaaaataaaaattattatctttttcaataagcaacaattgagcgaaaattaatattgctgtaannnnnnnacatgaaaaatgaatatttgtgttggg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12299357 |
aataaaaataaaaattattatctttttcaataagcaacaattgagcgaaaattaatattgctgtaatttttttacatgaaaaatgaatatttgtgttggg |
12299258 |
T |
|
| Q |
424 |
agtaacaataagttaaatttccaggacaacta |
455 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |
|
|
| T |
12299257 |
agtaacaatgggttaaatgtccaggacaacta |
12299226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University