View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19185_low_5 (Length: 448)
Name: NF19185_low_5
Description: NF19185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19185_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 31483855 - 31484283
Alignment:
| Q |
1 |
tagtagttgtggaagtggatatggaagaagtttgtgtcctttaccacttttatctagaagcaattcaactggatcttctacctcaagtgttaacaacaag |
100 |
Q |
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| T |
31483855 |
tagtagttgtggaagtggatatggaagaagtttgtgtcctttaccacttttatctagaagcaattcaactggatcttctacctcaagtgttaacaacaag |
31483954 |
T |
|
| Q |
101 |
aggaattctttgtcaaaagagggtattagtactgttaaatcaaattcacagaaactttcttcaacaaggctttctaactcatctggttcaaacagttatc |
200 |
Q |
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| T |
31483955 |
aggaattctttgtcaaaagagggtattagtactgttaaatcaaattcacagaaactttcttcaacaaggctttctaactcatctggttcaaacagttatc |
31484054 |
T |
|
| Q |
201 |
ttaaacctccattgaataagagttatggatctcatggtcattctgttagagttaatcctgttttgaatgttcctcctgctaacctatttggtttgagttc |
300 |
Q |
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| T |
31484055 |
ttaaacctccattgaataagagttatggatctcatggtcattctgttagagttaatcctgttttgaatgttcctcctgctaacctatttggtttgagttc |
31484154 |
T |
|
| Q |
301 |
aatcttctccaacaagagcaagaaaaagtagcattattttgcattactatatatttttgtgaacggatatctctgcatgcaactgcagagactaattcat |
400 |
Q |
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| T |
31484155 |
aatcttctccagcaagagcaagaaaaagtagcattattttgcattactatatatttttgtgaacggatatctctgcatgcaactgtagagactaattcat |
31484254 |
T |
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| Q |
401 |
caagtcagataagaccgcaacgtgtgaca |
429 |
Q |
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| T |
31484255 |
caagtcaaataagaccgcaacgtatgaca |
31484283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7197305 - 7197373
Alignment:
| Q |
1 |
tagtagttgtggaagtggatatggaagaagtttgtgtcctttaccacttttatctagaagcaattcaac |
69 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||| |||||| | |||| |||||||||||| |
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| T |
7197305 |
tagtagttgtggaagtggatatggtagaagtttatgtcctttgccacttctttctaaaagcaattcaac |
7197373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 7197539 - 7197610
Alignment:
| Q |
244 |
tgttagagttaatcctgttttgaatgttcctcctgctaacctatttggtttgagttcaatcttctccaacaa |
315 |
Q |
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|||||| |||| ||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||||| |
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| T |
7197539 |
tgttagggttagtcctgttttgaatgttccttattcaaacctttttggttttggttcaatcttctccaacaa |
7197610 |
T |
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